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Gay, C.

Publications and source records attributed to Gay, C..

2 recordsLinked to original sources

Comparing the Seasonal Diets of Buff-tailed Bumblebees and Honey Bees in a Forest Landscape: A Metabarcoding Approach

The declining diversity of pollinating insects is a major threat to ecosystem conservation, pollination services, and global food security. Honeybees (Apis mellifera L.) dominate managed pollination, but their dominance can affect other pollinators. Competition for resources can lead to decreased foraging success and survival rates for wild bees, especially bumblebees. This study explores the dietary composition of honeybees and buff-tailed bumblebees (Bombus terrestris L.) using metabarcoding techniques with three primers (ITS2, TrnLgh, and TrnLch) in Avensan, France. Primers detected different species pools, indicating a high diversity of plants visited by both species - including some false positives results inherent to metabarcoding methods. The "primer" effect was more important than the "pollinator" effect in segregating plants found. The Schoener index revealed a slight diet overlap in plant species used by honeybees and bumblebees, depending on the primer. Correspondence analyses showed a high segregation between species associated with honeybees or with bumblebees, regardless of the primer. The metabarcoding technique was found to be accurate in separating pollinator food niches, despite some biases of this technique: this result is not comparable with previous literature studying the diets of these two species, as traditional [fi]eld studies are needed to complement it and overcome these biases. To conclude, this study provides a fast and inexpensive approach to study pollinators floral resources sharing in the same geographical area and time scale, and provide insights to improve metabarcoding effectiveness in order to better describe diet niches.

ecology↗

Dispersal of influenza virus populations within the respiratory tract shapes their evolutionary potential

Viral infections are characterized by dispersal from an initial site to secondary locations within the host. How the resultant spatial heterogeneity shapes within-host genetic diversity and viral evolutionary pathways is poorly understood. Here we show that dispersal within and between the nasal cavity and trachea maintains diversity and is therefore conducive to adaptive evolution, whereas dispersal to the lungs is stochastic and gives rise to population heterogeneity. We infected ferrets either intranasally or by aerosol with a barcoded influenza A/California/07/2009 (H1N1) virus. At 1, 2 or 4 days post infection, dispersal was assessed by collecting 52 samples from throughout the respiratory tract of each animal. Irrespective of inoculation route, barcode compositions across the nasal turbinates and trachea were similar and highly diverse, revealing little constraint on the establishment of infection in the nasal cavity and descent through the trachea. By comparison, infection of the lungs produced genetically distinct viral populations. Lung populations were pauci-clonal, suggesting that each seeded location received relatively few viral genotypes. While aerosol inoculation gave distinct populations at every lung site sampled, within-host dispersal after intranasal inoculation produced larger patches, indicative of local expansion following seeding of the lungs. Throughout the respiratory tract, barcode diversity declined over time, but new diversity was generated through mutation. De novo variants were often unique to a given location, indicating that localized replication following dispersal resulted in population divergence. In summary, dispersal within the respiratory tract operates differently between regions and contributes to the potential for viral evolution to proceed independently in multiple within-host subpopulations.

microbiology↗