Biology subjects

Gascoigne, S. J. L.

Publications and source records attributed to Gascoigne, S. J. L..

5 recordsLinked to original sources

bioRxiv2023

From disturbances to nonlinear fitness and back.

Disturbances can occur as short-lived pulses (e.g., storms) or sustained presses (e.g., chronic drought). Much work in ecology has developed methods to help predict how natural populations respond to disturbances, but analyses of pulse and press disturbances has been largely disconnected. We present a unified matrix framework that links presses and pulses within the same analytical approach, showing how transient nonlinearities and demography shape fitness. We find that transient responses to pulse disturbances accumulate to determine the long-term response to press disturbances. For structured-population models, this cumulative change is given by a new Transient Response Matrix (TRM). Strikingly, the TRM also yields the second derivatives of population growth rate with respect to matrix elements. Thus, there is an intimate but unexpected relationship between nonlinear selection pressures on demographic rates, and the transient dynamics of populations. This relationship yields a strong correlation between TRM and generation time across 439 unique plant and animal species (2690 population models). We also show that the TRM is directly related to Cohens cumulative distance measure for populations converging to stability. Our framework provides ecologists with a general tool to predict population responses to diverse environmental changes.

ecology↗

bioRxiv2023

Structured demographic buffering: A framework to explore the environment drivers and demographic mechanisms underlying demographic buffering

Environmental stochasticity is a key determinant of population viability. Decades of work exploring how environmental stochasticity influences population dynamics have highlighted the ability of some natural populations to limit the negative effects of environmental stochasticity, one of these strategies being demographic buffering. Whilst various methods exist to quantify demographic buffering, we still do not know which environment factors and demographic characteristics are most responsible for the demographic buffering observed in natural populations. Here, we introduce a framework to quantify the relative effects of three key drivers of demographic buffering: environment components (e.g., temporal autocorrelation and variance), population structure, and demographic rates (e.g., progression and fertility). Using Integral Projection Models, we explore how these drivers impact the demographic buffering abilities of three plant species with different life histories and demonstrate how our approach successfully characterises a populations capacity to demographically buffer against environmental stochasticity in a changing world.

ecology↗

bioRxiv2023

A unified framework to identify demographic buffering in natural populations

The Demographic Buffering Hypothesis (DBH) predicts that natural selection reduces the temporal fluctuations in demographic processes (such as survival, development, and reproduction), due to their negative impacts on population dynamics. However, a comprehensive approach that allows for the examination of demographic buffering patterns across multiple species is still lacking. Here, we propose a three-step framework aimed at identifying and quantifying demographic buffering. Firstly, we categorize species along a continuum of variance based on their stochastic elasticities. Secondly, we examine the linear selection gradients, followed by the examination of nonlinear selection gradients as the third step. With these three steps, our framework overcomes existing limitations of conventional approaches to identify and quantify demographic buffering, allows for multi-species comparisons, and offers an insight into the evolutionary forces that shape demographic buffering. We apply this framework to mammal species and discuss both the advantages and potential of our framework.

ecology↗

bioRxiv2023

No general effects of advancing male age on ejaculates: a meta-analysis across the animal kingdom

Senescence, the deterioration of organismal function with advancing age, is a puzzling biological phenomenon. While actuarial senescence (i.e., age-dependent increases in mortality rates) is well described across some taxa, reproductive senescence (i.e. age- dependent declines in reproduction) is less understood, especially in males, with mixed patterns reported across studies. To examine the evidence for male reproductive senescence, we investigated how advancing male age affects ejaculate traits across non-human animals via a meta-analysis yielding 1814 effect sizes from 379 studies. We found no evidence for a general pattern of reproductive senescence. Instead, we found high heterogeneity for how reproduction changes with male age across animals. Some of this heterogeneity (>10%) was associated with biological factors. For example, there were taxonomical differences for some ejaculate traits -- sperm motility declined with male age in lab rodents and fish, whereas ejaculate size improved with male age in bulls, fish, and insects. Some methodological factors were also important in explaining this heterogeneity: studies sampling a larger proportion of a species lifespan were more likely to detect senescence in ejaculate traits, emphasising the need to examine the full life cycle of species to document senescence. Contrary to predictions, we reveal that the evidence for senescence in ejaculate traits is sporadic. Our findings will help generate novel hypotheses and identify more effective methodological approaches for studying male reproductive senescence.

evolutionary biology↗

bioRxiv2023

A standard protocol to report discrete stage-structured demographic information

O_LIStage-based demographic methods, such as matrix population models (MPMs), are powerful tools used to address a broad range of fundamental questions in ecology, evolutionary biology, and conservation science. Accordingly, MPMs now exist for over 3,000 species worldwide. These data are being digitised as an ongoing process and periodically released into two large open-access online repositories: the COMPADRE Plant Matrix Database and the COMADRE Animal Matrix Database. During the last decade, data archiving and curation of COMPADRE and COMADRE, and subsequent comparative research, have revealed pronounced variation in how MPMs are parameterized and reported. C_LIO_LIHere, we summarise current issues related to the parameterisation and reporting of MPMs that arise most frequently and outline how they affect MPM construction, analysis, and interpretation. To quantify variation in how MPMs are reported, we present results from a survey identifying key aspects of MPMs that are frequently unreported in manuscripts. We then screen COMPADRE and COMADRE to quantify how often key pieces of information are omitted from manuscripts using MPMs. C_LIO_LIOver 80% of surveyed researchers (n=60) state a clear benefit to adopting more standardised methodologies for reporting MPMs. Furthermore, over 85% of the 300 MPMs assessed from COMPADRE and COMADRE omitted one or more elements that are key to their accurate interpretation. Based on these insights, we identify fundamental issues that can arise from MPM construction and communication and provide suggestions to improve clarity, reproducibility, and future research utilising MPMs and their required metadata. To fortify reproducibility and empower researchers to take full advantage of their demographic data, we introduce a standardized protocol to present MPMs in publications. This standard is linked to www.compadre-db.org, so that authors wishing to archive their MPMs can do so prior to submission of publications, following examples from other open-access repositories such as DRYAD, Figshare, and Zenodo. C_LIO_LICombining and standardising MPMs parameterized from populations around the globe and across the tree of life opens up powerful research opportunities in evolutionary biology, ecology, and conservation research. However, this potential can only be fully realised by adopting standardised methods to ensure reproducibility. C_LI

ecology↗