Garcia, V. C. | bioRxiv Science

bioRxiv2026

Localised negative feedback shapes genome-wide patterning of meiotic DNA breaks

Genetic diversity within sexually reproducing species arises via the formation and repair of programmed DNA double-strand breaks (DSBs) created by the evolutionarily conserved topoisomerase-like enzyme, Spo11. Because DSBs threaten genome stability, their formation is tightly regulated in both space and time. In S. cerevisiae, Tel1, the orthologue of mammalian Ataxia Telangiectasia Mutated (ATM) kinase, suppresses nearby DSB formation through local inhibition known as DSB interference. However, whether such local inhibition reshapes the genome-wide DSB landscape remains unclear. Here, we develop a quantitative simulation framework to model how Tel1-mediated feedback shapes Spo11-DSB formation across the yeast genome. We demonstrate that innate chromosome-specific DSB patterns, when combined with interference, generate complex, population-level redistribution of DSBs. We define the spatial range over which interference propagates and provide evidence that this regulatory mechanism requires Tel1 recruitment to DSBs via Xrs2 and Tel1 kinase activity. Although the pro-DSB factor Rec114 contributes to DSB regulation, mutation of potential Rec114 phosphorylation sites indicates that it is not an essential target of Tel1. Together, these findings demonstrate how localised negative feedback can drive broad-scale, emergent patterning of a fundamental genome-modifying process, with the potential in meiosis to influence recombination initiation and, consequently, genetic variation across generations.

cell biology↗

bioRxiv2023

Xrs2 C-terminus mediates Tel1-dependent meiotic double-strand break interference

During meiosis, the programmed formation of DNA double-strand breaks (DSBs) by Spo11, a conserved topoisomerase II-like protein, initiates homologous recombination that leads to crossovers between homologous chromosomes, essential for accurate chromosome segregation and genome evolution. The DSB number, distribution and timing of formation are regulated during meiosis to ensure crossing over on all chromosomes and prevent genome instability. In S. cerevisiae, DSB interference suppresses the coincident formation of DSBs in neighboring hotspots through a Tel1/ATM dependent mechanism that remains unexplored. Here, we demonstrate that Tel1 is recruited to meiotic DSB hotspots and chromosomal axis sites in a DSB-dependent manner. This supports the tethered loop-axis complex (TLAC) model that postulates meiotic DSBs are formed within the chromosome axis environment. Tel1 recruitment to meiotic DSBs, DSB interference and the meiotic DNA damage checkpoint are all dependent on the C-terminal moiety of Xrs2, known to mediate Tel1-Xrs2 interaction in vegetative cells. However, mutation of the Xrs2 FxF/Y motif, known to stabilize Tel1 interaction with Xrs2, does not affect DSBs interference but abolishes the Tel1-dependent DNA damage checkpoint. Altogether, this work uncovers the dynamic association of Tel1 with meiotic chromosomes and highlights the critical role of its interaction with Xrs2 in fine-tuning both the meiotic DNA damage checkpoint and DSB interference. AUTHOR SUMMARYDuring meiosis, a special type of cell division that produces gametes, cells intentionally break their own DNA at preferred genomic sites (hotspots) to help shuffle genetic material between chromosomes. The repair process of those breaks, called homologous recombination, is crucial for genetic diversity and for ensuring chromosomes are distributed correctly to gametes. The number and location of DNA breaks are tightly controlled to prevent errors that could affect genetic stability. In the yeast model S. cerevisiae, a protein called Tel1 (the counterpart of ATM in mammals, a DNA damage sensor) helps limit the number of breaks per cell. Our research shows that Tel1 is recruited to DNA breaks and to specific chromosome structures (called axis), supporting the idea that DNA breaks happen within the axis environment. We also found that recruitment of Tel1 to DNA breaks depends on another protein, Xrs2. This interaction is crucial to limit further DNA breaks formation and to arrest cell cycle progression in response to DNA breaks. Overall, these findings shed light on Tel1 dynamics on meiotic chromosomes, and reveal how Tel1 and Xrs2 work together to maintain genetic stability during meiosis, a process essential for healthy reproduction and evolution.

molecular biology↗