Biology subjects

Gallego, J. A.

Publications and source records attributed to Gallego, J. A..

17 recordsLinked to original sources

bioRxiv2026

Neuromodulation enables transient flexible control of motoneurons

A motoneuron pool is often regarded as a rigid controller because the largely shared synaptic input across motoneurons leads to strongly correlated activity. However, brief deviations from this correlated behavior have been observed even in some constrained tasks, raising the question of whether these results reflect limitations of the rigid view of motoneuron pool control. Here we show that they do not. We developed a biophysical model of a motoneuron pool receiving shared excitatory and inhibitory synaptic inputs that also included the motoneuron-specific effects of neuromodulation; model parameters were tuned based on large-scale motoneuron recordings in humans. Simulations showed that the intrinsic differences in how motoneurons respond to neuromodulation are both necessary and sufficient to transiently decorrelate pairs of motoneurons receiving a shared synaptic input. Crucially, such transient decorrelation is only observed when motoneurons have different sensitivity to neuromodulation, consistent with experimental observations during volitional control in humans. Our model also explains how participants can improve their ability to transiently decorrelate the activity of motoneurons innervating the same muscle by leveraging refined behavioral strategies that exploit the differential response of motoneurons to neuromodulation, rather than through physiological changes. These results identify that heterogeneous sensitivity to neuromodulation enables brief flexibility in the otherwise rigid control of motoneurons enforced by a shared synaptic input, and show how practice allows participants to exploit latent flexibility within otherwise rigid constraints.

neuroscience↗

bioRxiv2026

Evolutionarily conserved neural dynamics across mice, monkeys, and humans

On evolutionary timescales, brain circuits adapt to support survival in each species ecological niche. While some anatomical aspects of neural circuitry are conserved across species with distant evolutionary origins, each species also exhibits specific circuit adaptations that enable its behavioral repertoire. It remains unclear whether homologous brain regions leverage analogous neural computations as different species perform common behaviors such as reaching and manipulating objects. Here, we directly assessed conservation of neural computations using intracortical recordings from mouse, monkey, and human motor cortex--a homologous region across many mammals--during motor behaviors crucial for survival. We hypothesized that, despite their phylogenetic distance, rodents and primates produce movements through conserved neural computations implemented by motor cortical population dynamics. Remarkably, we found that movement-related neural dynamics were highly conserved across species, while variations in behavioral output were uniquely captured in neural trajectory geometries. Strikingly, neural dynamics during movement across species were more conserved than those across brain regions in the same human and between motor preparation and execution in the same monkeys. Lastly, through manipulation of neural network models trained to perform reaching movements, we reinforce that conservation of neural dynamics across species likely stems from shared circuit constraints. We thus assert that evolution maintains neural computations across phylogeny even as behavioral repertoires expand.

neuroscience↗

bioRxiv2025

Why motor learning involves multiple systems: an algorithmic perspective

The initial stage of learning motor skills involves exploring vast action spaces, making it impractical to learn the value of every possible action independently. This poses a challenge for standard reinforcement learning approaches, which excel in constrained domains but struggle when the space of possible actions is high-dimensional. Recent work in machine learning has sought to mitigate this problem by combining deep re-inforcement learning with a supervised learning system that reduces the complexity of the control policy space by learning low-dimensional embeddings of an action space. Here, we propose that in the mammalian brain, the cortico-cerebellar network learns these low-dimensional action embeddings in a supervised way, while the basal ganglia learn value and policies in this action embedding space using reinforcement learning. We trained this model on reaching tasks and show that, contrary to traditional models of the basal ganglia, it recapitulates features of neural activity whereby similar reaching movements are associated with similar neural activity patterns in the basal ganglia. We also demonstrate a link between learning these low-dimensional action embeddings and both generalisation and the limits of multi-task adaptation in human behavioural studies. Through this framework, we propose a novel computational view of how key motor regions of the brain interact to efficiently learn a new skill.

neuroscience↗

bioRxiv2025

Neural signatures of motor memories emerge in neural network models

Animals can learn and seamlessly perform a great number of behaviors. However, it is unclear how neural activity can accommodate new behaviors without interfering with those an animal has already acquired. Recent studies in monkeys performing motor and brain-computer interface (BCI) learning tasks have identified neural signatures--so-called "memory traces" and "uniform shifts"--that appear in the neural activity of a familiar task after learning a new task. Here we asked when these signatures arise and how they are related to continual learning. By modeling a BCI learning paradigm, we show that both signatures emerge naturally as a consequence of learning, without requiring a specific mechanism. In general, memory traces and uniform shifts reflected savings by capturing how information from different tasks coexisted in the same neural activity patterns. Yet, although the properties of these two different signatures were both indicative of savings, they were uncorrelated with each other. When we added contextual inputs that separated the activity for the different tasks, these signatures decreased even when savings were maintained, demonstrating the challenges of defining a clear relationship between neural activity changes and continual learning.

neuroscience↗

bioRxiv2023

Conjoint specification of action by neocortex and striatum

The interplay between two major forebrain structures - cortex and subcortical striatum - is critical for flexible, goal-directed action. Traditionally, it has been proposed that striatum is critical for selecting what type of action is initiated while the primary motor cortex is involved in the online control of movement execution. Recent data indicates that striatum may also be critical for specifying movement execution. These alternatives have been difficult to reconcile because when comparing very distinct actions, as in the vast majority of work to date, they make essentially indistinguishable predictions. Here, we develop quantitative models to reveal a somewhat paradoxical insight: only comparing neural activity during similar actions makes strongly distinguishing predictions. We thus developed a novel reach-to-pull task in which mice reliably selected between two similar, but distinct reach targets and pull forces. Simultaneous cortical and subcortical recordings were uniquely consistent with a model in which cortex and striatum jointly specify flexible parameters of action during movement execution. One sentence summaryMotor cortex and subcortical striatum act in concert to specify the movement parameters of a reach-to-pull action in mice.

neuroscience↗

bioRxiv2023

Nonlinear manifolds underlie neural population activity during behaviour

There is rich variety in the activity of single neurons recorded during behaviour. Yet, these diverse single neuron responses can be well described by relatively few patterns of neural co-modulation. The study of such low-dimensional structure of neural population activity has provided important insights into how the brain generates behaviour. Virtually all of these studies have used linear dimensionality reduction techniques to estimate these population-wide co-modulation patterns, constraining them to a flat "neural manifold". Here, we hypothesised that since neurons have nonlinear responses and make thousands of distributed and recurrent connections that likely amplify such nonlinearities, neural manifolds should be intrinsically nonlinear. Combining neural population recordings from monkey, mouse, and human motor cortex, and mouse striatum, we show that: 1) neural manifolds are intrinsically nonlinear; 2) their nonlinearity becomes more evident during complex tasks that require more varied activity patterns; and 3) manifold nonlinearity varies across architecturally distinct brain regions. Simulations using recurrent neural network models confirmed the proposed relationship between circuit connectivity and manifold nonlinearity, including the differences across architecturally distinct regions. Thus, neural manifolds underlying the generation of behaviour are inherently nonlinear, and properly accounting for such nonlinearities will be critical as neuroscientists move towards studying numerous brain regions involved in increasingly complex and naturalistic behaviours.

neuroscience↗

bioRxiv2023

De novo motor learning creates structure in neural activity space that shapes adaptation

Animals can quickly adapt learned movements in response to external perturbations. Motor adaptation is likely influenced by an animals existing movement repertoire, but the nature of this influence is unclear. Long-term learning causes lasting changes in neural connectivity which determine the activity patterns that can be produced. Here, we sought to understand how a neural populations activity repertoire, acquired through long-term learning, affects short-term adaptation by modeling motor cortical neural population dynamics during de novo learning and subsequent adaptation using recurrent neural networks. We trained these networks on different motor repertoires comprising varying numbers of movements. Networks with multiple movements had more constrained and robust dynamics, which were associated with more defined neural structure--organization created by the neural population activity patterns corresponding to each movement. This structure facilitated adaptation, but only when small changes in motor output were required, and when the structure of the network inputs, the neural activity space, and the perturbation were congruent. These results highlight trade-offs in skill acquisition and demonstrate how prior experience and external cues during learning can shape the geometrical properties of neural population activity as well as subsequent adaptation.

neuroscience↗

bioRxiv2022

Feedback-based motor control can guide plasticity and drive rapid learning

Animals use afferent feedback to rapidly correct ongoing movements in the presence of a perturbation. Repeated exposure to a predictable perturbation leads to behavioural adaptation that counteracts its effects. Primary motor cortex (M1) is intimately involved in both processes, integrating inputs from various sensorimotor brain regions to update the motor output. Here, we investigate whether feedback-based motor control and motor adaptation may share a common implementation in M1 circuits. We trained a recurrent neural network to control its own output through an error feedback signal, which allowed it to recover rapidly from external perturbations. Implementing a biologically plausible plasticity rule based on this same feedback signal also enabled the network to learn to counteract persistent perturbations through a trial-by-trial process, in a manner that reproduced several key aspects of human adaptation. Moreover, the resultant network activity changes were also present in neural population recordings from monkey M1. Online movement correction and longer-term motor adaptation may thus share a common implementation in neural circuits.

neuroscience↗

bioRxiv2022

Preserved neural population dynamics across animals performing similar behaviour

Animals of the same species often exhibit similar behaviours that are advantageously adapted to their body and their environment. These behaviours are shaped by selection pressures over evolutionary timescales at the species level, yet each individual produces these behaviours using a different, uniquely constructed brain. It remains unclear how these common behavioural adaptations emerge from the idiosyncratic neural circuitry of a given individual. Here, we hypothesised that the adaptive behaviour of a species requires specific neural population latent dynamics. These latent dynamics should thus be preserved and identifiable across individuals within a species, regardless of the idiosyncratic aspects of each individuals brain. Using recordings of neural populations from monkey and mouse motor cortex, we show that individuals from the same species share surprisingly similar neural dynamics when they perform the same behaviour. The similarity in neural population dynamics extends beyond cortical regions to the dorsal striatum, an evolutionarily older structure, and also holds when animals con-sciously plan future movements without overt behaviour. These preserved dynamics are behaviourally-relevant, allowing decoding of intended and ongoing movements across individuals. We posit that these emergent neural population dynamics result from evolutionarily-imposed constraints on brain development, and reflect a fundamental property of the neural basis of behaviour.

neuroscience↗

bioRxiv2022

The nuclear GAPDH-HMGB cascade in cortical microglia regulates cognitive flexibility

We report a mechanism that underlies stress-induced cognitive inflexibility at the molecular level. In a mouse model under subacute stress in which deficits in rule shifting tasks were elicited, the nuclear glyceraldehyde dehydrogenase (N-GAPDH) cascade was activated specifically in microglia in the prelimbic cortex. The cognitive deficits were normalized with a pharmacological intervention with a compound (the RR compound) that selectively blocked the initiation of N-GAPDH cascade without affecting glycolytic activity. The normalization was also observed with a microglia-specific genetic intervention targeting the N-GAPDH cascade. Furthermore, hyperactivation of the prelimbic layer 5 excitatory neurons, which are known to be a neuronal substrate of cognitive inflexibility, was also normalized by the pharmacological and microglia-specific genetic interventions. The RR compound may offer a mechanism-driven, translational opportunity against stress-induced cognitive inflexibility. Taken together, we show a pivotal role of cortical microglia and microglia-neuron interaction in stress-induced cognitive inflexibility. We underscore the N-GAPDH cascade in microglia, which causally mediates stress-induced cognitive alteration.

molecular biology↗

bioRxiv2021

Estimating muscle activation from EMG using deep learning-based dynamical systems models

ObjectiveTo study the neural control of movement, it is often necessary to estimate how muscles are activated across a variety of behavioral conditions. However, estimating the latent command signal that underlies muscle activation is challenging due to its complex relation with recorded electromyographic (EMG) signals. Common approaches estimate muscle activation independently for each channel or require manual tuning of model hyperparameters to optimally preserve behaviorally-relevant features. ApproachHere, we adapted AutoLFADS, a large-scale, unsupervised deep learning approach originally designed to de-noise cortical spiking data, to estimate muscle activation from multi-muscle EMG signals. AutoLFADS uses recurrent neural networks (RNNs) to model the spatial and temporal regularities that underlie multi-muscle activation. Main ResultsWe first tested AutoLFADS on muscle activity from the rat hindlimb during locomotion, and found that it dynamically adjusts its frequency response characteristics across different phases of behavior. The model produced single-trial estimates of muscle activation that improved prediction of joint kinematics as compared to low-pass or Bayesian filtering. We also tested the generality of the approach by applying AutoLFADS to monkey forearm muscle activity from an isometric task. AutoLFADS uncovered previously uncharacterized high-frequency oscillations in the EMG that enhanced the correlation with measured force compared to low-pass or Bayesian filtering. The AutoLFADS-inferred estimates of muscle activation were also more closely correlated with simultaneously-recorded motor cortical activity than other tested approaches. SignificanceUltimately, this method leverages both dynamical systems modeling and artificial neural networks to provide estimates of muscle activation for multiple muscles that can be used for further studies of multi-muscle coordination and its control by upstream brain areas.

neuroscience↗

bioRxiv2021

Small, correlated changes in synaptic connectivity may facilitate rapid motor learning

Animals can rapidly adapt their movements to external perturbations. This adaptation is paralleled by changes in single neuron activity in the motor cortices. Behavioural and neural recording studies suggest that when animals learn to counteract a visuomotor perturbation, these changes originate from altered inputs to the motor cortices rather than from changes in local connectivity, as neural covariance is largely preserved during adaptation. Since measuring synaptic changes in vivo remains very challenging, we used a modular recurrent network model to compare the expected neural activity changes following learning through altered inputs (Hinput) and learning through local connectivity changes (Hlocal). Learning under Hinput produced small changes in neural activity and largely preserved the neural covariance, in good agreement with neural recordings in monkeys. Surprisingly given the presumed dependence of stable neural covariance on preserved circuit connectivity, Hlocal led to only slightly larger changes in neural activity and covariance compared to Hinput. This similarity is due to Hlocal only requiring small, correlated connectivity changes to counteract the perturbation, which provided the network with significant robustness against simulated synaptic noise. Simulations of tasks that impose increasingly larger behavioural changes revealed a growing difference between Hinput and Hlocal, which could be exploited when designing future experiments.

neuroscience↗

bioRxiv2021

Local field potentials reflect cortical population dynamics in a region-specific and frequency-dependent manner

The spiking activity of populations of cortical neurons is well described by a small number of population-wide covariance patterns, the "latent dynamics". These latent dynamics are largely driven by the same correlated synaptic currents across the circuit that determine the generation of local field potentials (LFP). Yet, the relationship between latent dynamics and LFPs remains largely unexplored. Here, we characterised this relationship for three different regions of primate sensorimotor cortex during reaching. The correlation between latent dynamics and LFPs was frequency-dependent and varied across regions. However, for any given region, this relationship remained stable across behaviour: in each of primary motor and premotor cortices, the LFP-latent dynamics correlation profile was remarkably similar between movement planning and execution. These robust associations between LFPs and neural population latent dynamics help bridge the wealth of studies reporting neural correlates of behaviour using either type of recordings.

neuroscience↗

bioRxiv2018

A stable, long-term cortical signature underlying consistent behavior

Animals readily execute learned motor behaviors in a consistent manner over long periods of time, yet similarly stable neural correlates remained elusive up to now. How does the cortex achieve this stable control? Using the sensorimotor system as a model of cortical processing, we investigated the hypothesis that the dynamics of neural latent activity, which capture the dominant co-variation patterns within the neural population, are preserved across time. We recorded from populations of neurons in premotor, primary motor, and somatosensory cortices for up to two years as monkeys performed a reaching task. Intriguingly, despite steady turnover in the recorded neurons, the low-dimensional latent dynamics remained stable. Such stability allowed reliable decoding of behavioral features for the entire timespan, while fixed decoders based on the recorded neural activity degraded substantially. We posit that latent cortical dynamics within the manifold are the fundamental and stable building blocks underlying consistent behavioral execution.

neuroscience↗

bioRxiv2018

Mechanical vibration does not systematically reduce the tremor in Essential Tremor patients

Essential tremor (ET) is a major cause of disability and is not effectively managed in half of the patients. We investigated whether mechanical vibration could reduce tremor in ET by selectively recruiting afferent pathways. We used piezoelectric actuators to deliver vibratory stimuli to the hand and forearm during long trials (4 min), while we monitored the tremor using inertial sensors. We analyzed the effect of four stimulation strategies, including different constant and variable vibration frequencies, in 18 ET patients. Although there was not a clear homogeneous response to vibration across patients and strategies, in most cases (50-72%) mechanical vibration was associated with an increase in the amplitude of their tremor. In contrast, the tremor was reduced in 5-22% of the patients, depending on the strategy. However, these results are hard to interpret given the intrinsic variability of the tremor: during equally long trials without vibration, the tremor changed significantly in 67% of the patients (increased in 45%; decreased in 22%). We conclude that mechanical vibration of the limb does not have a systematic effect on tremor in ET. Moreover, the observed intrinsic variability of the tremor should be taken into account when designing future experiments to assess tremor in ET and how it responds to any intervention.

bioengineering↗

bioRxiv2017

Multiple tasks viewed from the neural manifold: Stable control of varied behavior

How do populations of cortical neurons have the flexibility to perform different functions? We investigated this question in primary motor cortex (M1), where populations of neurons are able to generate a rich repertoire of motor behaviors. We recorded neural activity while monkeys performed a variety of wrist and reach-to-grasp motor tasks, each requiring a different pattern of neural activity. We characterized the flexibility of M1 movement control by comparing the \"neural modes\" that capture covariation across neurons, believed to arise from network connectivity. We found large similarities in the structure of the neural modes across tasks, as well as striking similarities in their temporal activation dynamics. These similarities were only apparent at the population level. Moreover, a subset of these well-preserved modes captured a task-independent mapping onto muscle commands. We hypothesize that this system of flexibly combined, stable neural modes gives M1 the flexibility to generate our wide-ranging behavioral repertoire.

neuroscience↗

bioRxiv2017

A Neural Population Mechanism For Rapid Learning

Long-term learning of language, mathematics, and motor skills likely requires plastic changes in the cortex, but behavior often requires faster changes, sometimes based even on single errors. Here, we show evidence of one mechanism by which the brain can rapidly develop new motor output, seemingly without altering the functional connectivity between or within cortical areas. We recorded simultaneously from hundreds of neurons in the premotor (PMd) and primary motor (M1) cortices, and computed models relating these neural populations throughout adaptation to reaching movement perturbations. We found a signature of learning in the \"null subspace\" of PMd with respect to M1. Earlier experiments have shown that null subspace activity allows the motor cortex to alter preparatory activity without directly influencing M1. In our experiments, the null subspace planning activity evolved with the adaptation, yet the \"potent\" mapping that captures information sent to M1 was preserved. Our results illustrate a population-level mechanism within the motor cortices to adjust the output from one brain area to its downstream structures that could be exploited throughout the brain for rapid, online behavioral adaptation.

neuroscience↗