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Gagnon, J.-F.

Publications and source records attributed to Gagnon, J.-F..

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Deep learning using EEG spectrograms for prognosis in idiopathic rapid eye movement behavior disorder (RBD)

REM Behavior Disorder (RBD) is now recognized as the prodromal stage of -synucleinopathies such as Parkinsons disease (PD). In this paper, we describe deep learning models for diagnosis/prognosis derived from a few minutes of eyes-closed resting electroencephalography data (EEG) collected from idiopathic RBD patients (n=121) and healthy controls (HC, n=91). A few years after the EEG acquisition (4 {+/-} 2 years), a subset of the RBD patients eventually developed either PD (n=14) or Dementia with Lewy bodies (DLB, n=13), while the rest remained idiopathic. We describe first a simple convolutional neural network (DCNN) with a five-layer architecture combining filtering and pooling, which we train using stacked multi-channel EEG spectrograms. We treat the data as in audio or image classification problems where deep networks have proven highly successful by exploiting compositional and translationally invariant features in the data. For comparison, we study an even simpler deep recurrent neural network using three stacked Long Short Term Memory network (LSTM) cells or gated-recurrent unit (GRU) cells--with very similar results. The performance of these networks typically reaches 80% ({+/-}1%) classification accuracy in the balanced HC vs. PD-outcome classification problem. In particular, using data from a single EEG channel we obtain an area under the curve (AUC) of 87% ({+/-}1%) while avoiding spectral feature selection. The trained classifier can also be used to generate synthetic spectrograms to study what spectrogram features are relevant for classification, pointing to the presence of theta band bursts and a decrease of power in the alpha band in future PD or DLB patients compared to HCs. We conclude that deep networks may provide a key tool for the analysis of EEG dynamics even from relatively small datasets and enable the delivery of new biomarkers.

bioinformatics

Algorithmic complexity of EEG as a prognosis biomarker of neurodegeneration in idiopathic rapid eye movement behavior disorder (RBD)

ObjectiveIdiopathic REM sleep behavior disorder (RBD) is a serious risk factor for neurodegenerative processes such as Parkinsons disease (PD). We investigate the use of EEG algorithmic complexity derived metrics for its prognosis.\n\nMethodsWe analyzed resting state EEG data collected from 114 idiopathic RBD patients and 83 healthy controls in a longitudinal study forming a cohort in which several RBD patients developed PD or dementia with Lewy bodies. Multichannel data from[~] 5 minute recordings was converted to spectrograms and their algorithmic complexity estimated using Lempel-Ziv-Welch compression (LZW).\n\nResultsComplexity measures and entropy rate displayed statistically significant differences between groups. Results are compared to those using the ratio of slow to fast frequency power, which they are seen to complement by displaying increased sensitivity even when using a few EEG channels.\n\nConclusionsPoor prognosis in RBD appears to be associated with decreased complexity of EEG spectrograms stemming in part from frequency power imbalances and cross-frequency amplitude coupling.\n\nSignificanceAlgorithmic complexity metrics provide a robust, powerful and complementary way to quantify the dynamics of EEG signals in RBD with links to emerging theories of brain function stemming from algorithmic information theory.\n\nIndex TermsBiomarkers, EEG, LZW, PD, LBD

neuroscience