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Funke, S.

Publications and source records attributed to Funke, S..

2 recordsLinked to original sources

Impacts of landscape-scale windthrow and subsequent, variable reforestation on bird communities in Central Europe

With climate change, the area affected by and the intensity of forest disturbances such as windthrow, insect outbreaks and fire will be increasing. Post-disturbance forest management will be varied, and it is difficult to predict how much natural succession will be allowed in comparison to reforestation. Both, disturbance and reforestation will affect forest biodiversity globally, but potential shifts in species distribution, abundance and community composition are poorly understood. We studied the response of breeding bird communities to windthrow and different reforestation strategies in one of Central Europes largest contiguous windthrow areas created by storm Kyrill in 2007. A decade after the disturbance, we compared bird species diversity, population densities and community composition on plots in replanted beech, replanted conifers and secondary succession (all salvage-logged after the storm), with undisturbed old Norway spruce Picea abies as a control, in the setting of a natural experiment. Of the stands blown down, 95% were Norway Spruce. Reforestation strategies varied, with Spruce and non-native conifers planted on twice the area that was replanted with European Beech Fagus sylvestris. Large areas were still dominated by successional tree species a decade after the storm, especially birch, mirroring recommendations of sub-national forestry agencies to include secondary succession in future forest development. Birds responded strongly to windthrow, with a pronounced community turnover. Species associated with high conifer stands reached significantly lower densities on sample plots in disturbed areas. Replanted areas were characterized by mostly ubiquitous bird species. Areas dominated by secondary succession, especially birch Betula spp., were characterized by high densities of long-distance migrants (often species of conservation concern) and shrubland species, among them several indicator species. Our results suggest that an increase of forest disturbance across Central Europe will lead to a pronounced reorganisation of biodiversity. Strategies that allow more secondary succession, and avoid replanting allochthonous tree species are likely to benefit populations of depleted bird species, even at salvage-logged and cleared disturbance sites.

ecology↗

Towards personalized computer simulation of breast cancer treatment: a multi-scale pharmacokinetic and pharmacodynamic model informed by multi-type patient data

Mathematical modeling and simulation have emerged as a potentially powerful, time and cost effective approach to personalized cancer treatment. The usefulness of mechanistic models to disentangle complex multi-scale cancer processes such as treatment response has been widely acknowledged. However, a major barrier for multi-scale models to predict the outcomes of therapeutic regimens in a particular patient lies in their initialization and parameterization which need to reflect individual cancer characteristics accurately. In this study we use multi-type routinely acquired measurements on a single breast tumor, including histopathology, magnetic resonance imaging, and molecular profiling to personalize parts of a complex multi-scale model of breast cancer treated with chemotherapeutic and anti-angiogenic agents. We model the dynamics of drugs in tissue (pharmacokinetics) and the corresponding effects on their targets (pharmacodynamics). We developed a open-source computer program that simulates cross-sections of tumors under 12-week therapy regimes and use it to individually reproduce and elucidate treatment outcomes of four patients. For two of the tumors that did not respond to therapy, we used model simulations to suggest alternative regimes, depending on their individual characteristics, with improved outcomes. We found that more frequent doses of chemothereapy reduce tumor burden in a low proliferative tumor while lower doses of anti-angiogenic agents improve drug penetration in a poorly perfused tumor. In addition to bridge multi-type clinical data to shed light on individual treatment outcomes, our approach identified a few tumor-related aspects that need to be clinically portraited better to allow for future model-driven personalized cancer therapy.

cancer biology↗