Biology subjects

Franchini, L. F.

Publications and source records attributed to Franchini, L. F..

3 recordsLinked to original sources

bioRxiv2020

Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage

The Blastula Chordin- and Noggin Expressing Center (BCNE) comprises animal-dorsal and marginal-dorsal cells of the amphibian blastula and contains the precursors of the brain and of the gastrula organizer. Previous findings suggested that the BCNE behaves as a homogeneous cell population that depends only on nuclear {beta}-catenin activity but does not require Nodal and segregates into its descendants later, during gastrulation. In this work, we analyzed if the BCNE is already compartmentalized at the blastula stage. In contrast to previous findings, we show that the BCNE does not behave as a homogeneous cell population in response to Nodal antagonists. In fact, we found that the chordin.1 expression in a marginal subpopulation of notochordal precursors indeed requires Nodal input. We also establish that an animal BCNE subpopulation of cells that express both, chordin.1 and sox2 (a marker of pluripotent neuroectodermal cells), and gives rise to most of the brain, persisted at blastula stage after blocking Nodal. Moreover, RT-qPCR analysis showed that chordin.1 and sox2 expression increased at blastula stage after blocking Nodal. Therefore, Nodal signaling is required to define a population of chordin.1+ cells and to restrict the recruitment of brain precursors within the BCNE as early as at blastula stage.

developmental biology↗

bioRxiv2019

Distinct evolutionary trajectories of neuronal and hair cell nicotinic acetylcholine receptors

The expansion and pruning of ion channel families has played a crucial role in the evolution of nervous systems. Remarkably, with a highly conserved vertebrate complement, nicotinic acetylcholine receptors (nAChRs) are unique among ligand-gated ion channels in that members of the family have distinct roles in synaptic transmission in non-overlapping domains, either in the nervous system, the inner ear hair cells or the neuromuscular junction. Here, we performed a comprehensive analysis of vertebrate nAChRs sequences, single cell expression patterns and comparative functional properties of receptors from three representative tetrapod species. We show that hair cell nAChRs underwent a distinct evolutionary trajectory to that of neuronal receptors. These were most likely shaped by different co-expression patterns and co-assembly rules of component subunits. Thus, neuronal nAChRs showed high degree of coding sequence conservation, coupled to greater co-expression variance and conservation of functional properties across tetrapod clades. In contrast, hair cell 910 nAChRs exhibited greater sequence divergence, narrow co-expression pattern and great variability of functional properties across species. These results point to differential substrates for random change within the family of gene paralogs that relate to the segregated roles of nAChRs in synaptic transmission.\n\nSignificance statementOur work exploits several peculiarities of the family of vertebrate nicotinic acetylcholine receptors (nAChRs) to explore the evolutionary trajectories of a ligand-gated ion channel family. By performing a comprehensive comparative analysis of nAChR subunits coding sequences, single cell expression patterns and functional properties we found a contrasting evolutionary history between nAChRs with widespread expression in the nervous system compared to those with isolated expression in the inner ear. Evolutionary changes were focused on differences in co-expression and co-assembly patterns for the former and coding sequences in the latter. This multidisciplinary approach provides further insight into the evolutionary processes that shaped the nervous and sensory systems of extant animals.

neuroscience↗

bioRxiv2018

Positive Selection and Adaptation of Novel Inner Ear Genes in the Mammalian Lineage

The mammalian inner ear possesses functional and morphological innovations that contribute to its unique hearing capacities. The genetic bases underlying the evolution of this mammalian landmark are poorly understood. We propose that the emergence of morphological and functional innovations in the mammalian inner ear could have been driven by adaptive molecular evolution.\n\nIn this work, we analyzed the complete inner ear transcriptome in order to identify genes that show signatures of adaptive evolution in this lineage. We analyzed approximately 1,300 inner ear expressed genes and found that 13 % show signatures of positive selection in the mammalian lineage. Several of these genes are known to play an important function in the inner ear. In addition, we identified that a significant proportion of genes showing signatures of adaptive evolution in mammals have not been previously reported to participate in inner ear development and/or physiology. We focused our analysis in two of these novel genes: STRIP2 and ABLIM2 by generating null mutant mice and analyzed their auditory function. We found that mice lacking Strip2 displayed a decrease in neural response amplitudes. In addition, we observed a reduction in the number of afferent synapses, suggesting a potential cochlear neuropathy.\n\nThus, this study shows the usefulness of pursuing a high-throughput evolutionary approach followed by functional studies to track down novel genes that are important for inner ear function. Moreover, this approach sheds light on the genetic basis underlying the evolution of the mammalian inner ear.

evolutionary biology↗