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Fowler, E.

Publications and source records attributed to Fowler, E..

2 recordsLinked to original sources

Synthetic Data Generation and Nonparametric Techniques for Assessing Multivariate Similarity to Address Small-Sample Size Challenges

Data modeling in biomedical research often operates in the small-sample regime, where the number of observations is small relative to the data dimensionality; the detrimental effects of limited sample sizes are well documented in cancer studies. Synthetic data offers a potential solution to data shortfalls provided that the data generated is an adequate facsimile of the underlying distribution; the adequacy of such synthetic data remains an open-ended problem. In this work, we evaluate a synthetic generator proposed previously. The generator applies a series of transformations to the observed data to accommodate the small-sample size resulting in an uncoupled representation, where uncorrelated marginal distributions are modeled with optimized univariate kernel density estimation. In this report, (1) we develop a nonparametric method for assessing multivariate similarity based on the Cramer-Wold theorem and random projection testing, (2) investigate when the absence of bivariate correlation approximates independence in a non-normal setting, and (3) evaluate artifacts induced by data compression. The presentation is primarily methodological; low-dimensional data were used so each stage of the generation process could be analyzed explicitly. A formal testing framework was developed by comparing random projection level outcomes with a two-sample test, modeling these outcomes as Bernoulli trials, aggregating replicate outcomes within each projection direction, and pooling outcomes across many directions, yielding a scalable standardized normal test-statistic. The key innovation was decoupling the two-sample test significance level from that governing finalized normal inference. We showed the same projection framework also evaluates the full multivariate covariance structure. The generator produced high-fidelity multivariate synthetic data when the bivariate correlation approximates independence in the non-normal setting; in highly compressed data, residual modes were best modeled as normally distributed regardless of their intrinsic distributional form. Ongoing work includes applying these methods to higher-dimensional, diverse data.

bioinformatics↗

Advancements in an Automated Breast Density Detection Technique for Breast Cancer Risk Prediction: a Synthetic Signal-dependent Noise Construct

Breast density is an important breast cancer risk factor estimated from mammograms and useful for breast cancer risk prediction. We describe a new formulation built on the backbone of an established automated percentage of breast density detection method. This framework relies on signal-dependent noise (SDN), characterized by a statistical dependence between the variance and mean signal. Variations in this dependency due to different image data representations cause degradation in the algorithms performance; the current work addresses this problem by synthesizing a stochastic process conditioned on a given mammogram instead of analyzing the mammogram directly. Image data used in the analysis was derived from three breast cancer case-control studies employing different mammographic technologies including full field digital mammography (both raw and clinical images) and digital breast tomosynthesis. The new formulation produced significant odds ratios across all image data representations due to these methodological advancements: (1) synthesis of SDN to an optimal quadratic structure given an arbitrary image; and (2) ensemble averaging over a given image, boosting the signal. We also demonstrate methods to standardize and combine measurements from different technologies using a probability density transformation technique. This automated technique can be applied to images from different technologies with minimal adjustment, thereby making it suitable for both research and clinical applications.

bioengineering↗