Biology subjects

Fosse, C.

Publications and source records attributed to Fosse, C..

3 recordsLinked to original sources

bioRxiv2026

Active control of surface immobilization in the foraging behavior of Paramecium

Paramecium is a common freshwater ciliate, a unicellular swimming eukaryote that feeds on bacteria. Since the discovery that its motility is controlled by action potentials, which earned it the nickname of "swimming neuron", many studies have documented the effect of various stimuli on its behavior, as well as their physiological basis, highlighting the richness of adaptive behavior in this unicellular organism. The logic of its autonomous behavior has received comparably less attention. For example, when Paramecium encounters a surface, it may slide or avoid it by a directional change, triggered by an action potential, or it may immobilize on the surface, a behavior often called thigmotaxis. Here we ask why and how Paramecium immobilizes on surfaces. With long term behavioral tracking, we show that this variable behavior is a component of Paramecium's foraging behavior in the presence of bacteria, where the organism alternates between exploring and stopping on surfaces to feed. This immobilization is physiologically controlled by a calcium influx. Using mutant strains, high speed imaging, particle image velocimetry and hydrodynamics simulation, we further show that surface immobilization occurs by an inhibition of locomotor cilia, while oral cilia continue beating strongly. These findings open the perspective of studying the physiological control of foraging in a unicellular organism, a complex ecologically relevant behavior potentially involving sensory processing, memory, decision making, and motor control.

microbiology↗

bioRxiv2025

Single camera estimation of microswimmer depth with a convolutional network

A number of techniques have been developed to measure the three-dimensional trajectories of protists, which require special experimental setups, such as a pair of orthogonal cameras. On the other hand, machine learning techniques have been used to estimate the vertical position of spherical particles from the defocus pattern, but they require the acquisition of a labeled dataset with finely spaced vertical positions. Here we describe a simple way to make a dataset of Paramecium images labeled with vertical position from a single 5 minutes movie, based on a tilted slide setup. We used this dataset to train a simple convolutional network to estimate the vertical position of Paramecium from conventional bright field images. As an application, we show that this technique has sufficient accuracy to study the surface following behavior of Paramecium (thigmotaxis).

microbiology↗

bioRxiv2021

Aurora B/C-dependent phosphorylation promotesRec8 cleavage in mammalian oocytes

To generate haploid gametes, cohesin is removed in a step-wise manner from chromosome arms in meiosis I and the centromere region in meiosis II, to segregate chromosomes and sister chromatids, respectively. Meiotic cohesin removal requires cleavage of the meiosis-specific kleisin subunit Rec8 by the protease Separase[1, 2]. In yeast, Rec8 is kept in a non-phosphorylated state by the action of PP2A-B56, which is localised to the centromere region, thereby preventing cohesin removal from this region in meiosis I[3-5]. However, it is unknown whether Rec8 has to be equally phosphorylated for cleavage, and whether centromeric cohesin protection is indeed brought about by dephosphorylation of Rec8 preventing cleavage, in mammalian meiosis. The identity of one or several potential Rec8-specific kinase(s) is also unknown. This is due to technical challenges, as Rec8 is poorly conserved preventing a direct translation of the knowledge gained from model systems such as yeast and C. elegans to mammals, and additionally, there is no turn-over of Rec8 after cohesion establishment, preventing phosphomutant analysis of functional Rec8. To address how Rec8 cleavage is brought about in mammals, we adapted a biosensor for Separase to study Rec8 cleavage in single mouse oocytes by live imaging, and identified phosphorylation sites promoting cleavage. We found that Rec8 cleavage by Separase depends on Aurora B/C kinase activity, and identified a residue promoting cleavage and being phosphorylated in an Aurora B/C kinase-dependent manner. Accordingly, inhibition of Aurora B/C kinase during meiotic maturation impairs endogenous Rec8 phosphorylation and chromosome segregation.

cell biology↗