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Forbey, J. S.

Publications and source records attributed to Forbey, J. S..

3 recordsLinked to original sources

Drone-Based Monitoring of Reproductive Potential in a Foundational Shrub Species

Restoration and conservation of native plant populations will benefit from identifying individual plants with high reproductive success. While high-fecundity plants are ideal for seed sourcing, locating these plants across heterogeneous landscapes presents a logistical challenge. This challenge is especially significant for big sagebrush (Artemisia tridentata), a foundational species that is the focus of large-scale seed collection for restoration efforts in western rangelands. We evaluated whether cost-effective RGB imagery from unoccupied aerial vehicles (UAVs) could map flower stalk production in big sagebrush plants. Models were trained using three years of data from four sites spanning an elevational gradient that included all three big sagebrush subspecies: A. t. wyomingensis, A. t. vaseyana, and A. t. tridentata. Our model predicted flower stalk production from UAV imagery with a Mean Absolute Error (MAE) of [~]100 stalks, which is relatively low given that some plants produced more than 700 stalks. A hurdle model that explicitly accounted for excess zeroes outperformed simpler negative binomial models, suggesting that reproductive failure is distinct from flower stalk production in reproductive plants. Structural metrics, including height differences between June and September, canopy height, and edge-to-area ratio of plant crowns, had stronger effects in our model for counts of flower stalk production than spectral data. Model performance was consistent across environmentally heterogeneous sites but declined when applied to years excluded from training, indicating that year-specific training data may be necessary for interannual predictions. These results demonstrate that UAVs can monitor reproductive potential in wild plants and help identify high-fecundity individuals for seed collection. Our work underscores the need for future research that can improve predictions of flower production, including integrating multispectral data and increasing model reliability across years to support climate-resilient restoration strategies.

ecology↗

Universal assay for measuring vertebrate telomeres by real-time quantitative PCR

Telomere length dynamics are an established biomarker of health and aging in animals. The study of telomeres in numerous species has been facilitated by methods to measure telomere length by real-time quantitative PCR (qPCR). In this method, telomere length is determined by quantifying the amount of telomeric DNA repeats in a sample and normalizing this to the total amount of genomic DNA. This normalization requires the development of genomic reference primers suitable for qPCR, which remains challenging in non-model organism with genomes that have not been sequenced. Here we report reference primers that can be used in qPCR to measure telomere lengths in any vertebrate species. We designed primer pairs to amplify genetic elements that are highly conserved between evolutionarily distant taxa and tested them in species that span the vertebrate tree of life. We report five primer pairs that meet the specificity and reproducibility standards of qPCR. In addition, we demonstrate how to choose the best primers for a given species by testing the primers on multiple individuals within a species and applying an established computational tool. These reference primers can facilitate the application of qPCR-based telomere length measurements in any vertebrate species of ecological or economic interest.

molecular biology↗

Metagenomic sequencing provides insights into the location of microbial detoxification in the gut of a small mammalian herbivore

Microbial detoxification of plant defense compounds influences the use of certain plants as food sources by herbivores. The location of microbial detoxification along the gut could have profound influences on the distribution, metabolism, and tolerance to toxic compounds. Stephens woodrats (Neotoma stephensi) specialize on juniper, which is heavily defended by numerous defensive compounds, such as oxalate, phenolics, and monoterpenes. Woodrats maintain two gut chambers harboring dense microbial communities: a foregut chamber proximal to the major site of toxin absorption, and a cecal chamber in their hindgut. We performed several experiments to investigate the location of microbial detoxification in the woodrat gut. First, we measured levels of toxins across gut chambers. Compared to food material, oxalate concentrations were immediately lower in the foregut chamber, while concentrations of terpenes remain high in the foregut, and are lowest in the cecal chamber. We also conducted metagenomic sequencing of the foregut and cecal chambers to compare microbial functions. We found that the majority of genes associated with detoxification functions were more abundant in the cecal chamber. However, some genes associated with degradation of oxalate and phenolic compounds were more abundant in the foregut. Thus, it seems that microbial detoxification may take place in various chambers depending on the class of chemical compound. We hypothesize that the location of microbial detoxification could impact the tolerance of animals to these compounds, which may have ecological and evolutionary consequences.

microbiology↗