Biology subjects

Fletcher, E. E.

Publications and source records attributed to Fletcher, E. E..

3 recordsLinked to original sources

bioRxiv2026

MCM10 targets CMG dimers via a conserved mechanism for synchronized helicase activation

Activation of the CMG (CDC45-MCM-GINS) helicase by MCM10 is a central unresolved step in DNA replication. DNA is melted within a dimeric CMG complex and one strand is expelled from each topologically closed MCM ring. How MCM10 drives this process is unclear owing to a lack of structural information. Here, by determining structures of yeast CMG-Mcm10 complexes, and of human CMG-Pol {varepsilon} dimers assembled by DONSON and bound to MCM10 and the helicase activator RECQL4, we reveal a conserved mechanism of CMG helicase activation in eukaryotes. MCM10 targets CMG dimers through highly conserved and species-specific interactions, that in human also involve RECQL4. Our data indicate this arrangement allows MCM10 to stimulate DNA unwinding by CMG and to utilise the associated conformational changes to drive single-stranded DNA ejection between MCM2 and MCM5. This mechanism provides an explanation for synchronized activation of two CMG helicases at origins of bidirectional replication.

molecular biology↗

bioRxiv2022

The Response of the Eukaryotic Replisome to G-quadruplex- and i-motif-forming Sequences

Sequences that can form DNA secondary structures, such as G-quadruplexes (G4s) and intercalated-Motifs (iMs), are abundant in the human genome and play a range of physiological roles. However, they can also pose a challenge to the replication machinery and in turn threaten genome stability. Multiple lines of evidence suggest G4s interfere with replication, but the underlying mechanism remains unclear. Moreover, there is a lack of evidence of how iMs affect the replisome. Here, we reconstitute replication of physiologically derived structure-forming sequences to find that a single G4 or iM is sufficient to arrest DNA replication. Direct single molecule structure detection within solid-state nanopores reveals structures form as a consequence of replication. A combination of genetic and biophysical characterisation establishes that structure forming capacity is a key determinant of replisome arrest. Mechanistically, replication fork arrest is caused by impaired synthesis, resulting in helicase-polymerase uncoupling. Significantly, iMs also induce breakage of nascent DNA. Finally, stalled forks are only rescued by a specialised helicase, Pif1, but not Sgs1 or Chl1. Altogether, this study provides a potential mechanism for quadruplex structure formation and resolution during replication and highlights G4s and iMs as endogenous sources of replication stress, which may explain their genomic instability and mutation frequencies in cancer.

molecular biology↗

bioRxiv2022

Structures of RecBCD in complex with phage-encoded inhibitor proteins reveal distinctive strategies for evasion of a bacterial immunity hub

Following infection of bacterial cells, bacteriophage modulate double-stranded DNA break repair pathways to protect themselves from host immunity systems and prioritise their own recombinases. Here we present biochemical and structural analysis of two phage proteins, gp5.9 and Abc2, which target the DNA break resection complex RecBCD. These exemplify two contrasting mechanisms for control of DNA break repair in which the RecBCD complex is either inhibited or co-opted for the benefit of the invading phage. Gp5.9 completely inhibits RecBCD by preventing it from binding to DNA. The RecBCD-gp5.9 structure shows that gp5.9 acts by substrate mimicry, binding predominantly to the RecB arm domain and competing sterically for the DNA binding site. Gp5.9 adopts a parallel coiled-coil architecture that is unprecedented for a natural DNA mimic protein. In contrast, binding of Abc2 does not substantially affect the biochemical activities of isolated RecBCD. The RecBCD-Abc2 structure shows that Abc2 binds to the Chi-recognition domains of the RecC subunit in a position that might enable it to mediate the loading of phage recombinases onto its single-stranded DNA products.

biochemistry↗