Biology subjects

Fernando-Peiris, S.

Publications and source records attributed to Fernando-Peiris, S..

2 recordsLinked to original sources

bioRxiv2026

In situ pulse dispersion estimation via third-harmonic generation interferometric autocorrelation for multiphoton microscopy

Three-photon microscopy enables deep-tissue imaging but is highly sensitive to excitation pulse quality, since three-photon excitation efficiency scales with the cube of instantaneous intensity. Group-delay dispersion (GDD) and third-order dispersion (TOD) accumulated through the laser and microscope optics can substantially reduce peak intensity at the focal plane, yet these quantities are rarely measured where imaging occurs. Here, we use third-harmonic generation (THG) interferometric autocorrelation, together with Dispersion Look-Up-Table Estimation (D-LUTE) and a joint two-measurement fitting procedure validated on synthetic data, to estimate baseline GDD and TOD directly at the objective focal plane, requiring only a compact autocorrelator module added to the microscope beam path. Applying this method at 1300 nm and 1600 nm excitation across two microscope systems equipped with different units of the same laser model, we find pulse durations 1.4- to 1.7-fold longer than the transform limit at every condition, driven predominantly by TOD, which varied by roughly 2.7-fold between the two systems. Using the endogenous THG signal from myelinated fibers, we further demonstrate in vivo pulse characterization in the mouse brain, finding no measurable broadening between the tissue surface and a depth of nearly a millimeter. This low-cost, easily implemented approach enables routine, in situ pulse monitoring across multiphoton microscopy platforms.

bioengineering↗

bioRxiv2025

Internal and external contexts drive distinct dynamics in shared action-encoding striatal neurons

Animals can initiate movements either in response to external cues or from internal drive, yet how the brain flexibly supports both remains unclear. Disorders such as Parkinsons disease disrupt these modes differently, suggesting distinct underlying mechanisms. Such differences could arise from specialized circuits dedicated to each action mode or from shared neuronal populations that shift their dynamics across contexts. To distinguish between these possibilities, we performed two-photon calcium imaging in the dorsolateral striatum as mice executed the same lever press either spontaneously or in response to a cue, enabling direct comparison of internally and externally triggered actions. Unsupervised clustering revealed subpopulations of neurons modulated during cue, movement, or post-action periods. Critically, the same neurons were tuned to movement across initiation contexts. However, the dynamics of this shared population evolved within distinct "context" and "action" subspaces, even before movement initiation. Both dopamine D1- and D2-receptor-expressing spiny projection neurons contributed to both subspaces, with D1-SPNs more active at the time of the sensory stimulus. These results show that context shapes neural dynamics within a shared movement-encoding population, revealing a context-generalizable striatal code that supports flexible movement initiation across internal and external drives.

neuroscience↗