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Fernandes, A. P.

Publications and source records attributed to Fernandes, A. P..

3 recordsLinked to original sources

Evolution of reproduction driven by ecology at the onset of multicellularity

At the origin of multicellularity, genetic programs used by single-celled organisms to interact with their environment become organised into a developmental program. While previous work has clarified the selective advantages of simple multicellularity, the origin of development remains unclear. Here, we investigate the ecological origin of a fundamental developmental process -- multicellular reproduction -- using a computational model where cells forage in a structured environment, and evolve adhesion and regulated environmental responses. Multicellular modes of reproduction are not pre-specified in the model, but must emerge from the evolving dynamics under ecological selection. We find that distinct multicellular life cycles evolve depending on the spatial distribution of resources. Among these are life cycles with a single-celled propagule phase the most prevalent reproductive strategy in multicellular life that evolves as a dispersal strategy to reach new resources. These propagules form through the activation of molecular programs co-opted from the unicellular ancestor, where they mediated interactions with neighbours in its ecological context. Once propagules evolve, multicellular lineages can invade environments previously dominated by unicellular competitors, showing this strategy is adaptive beyond the conditions that permit its evolution. Altogether, our results show that developmental regulation evolves through co-option of ecological interactions during the transition to multicellularity. Significance statementReproduction is a universal feature of life. Yet, the evolution of multicellularity transformed it fundamentally: while single-celled organisms reproduce via cell division, reproduction in multicellular organisms is a complex process involving the coordination of many cells. How these new forms of multicellular reproduction first evolved is currently unknown. Using a computational model, we study how group reproduction emerges from the collective dynamics of individual cells. The model shows that unicellular ancestral life cycles can be repurposed as propagules used for reproduction in multicellular species, suggesting that genetic co-option is a key mechanism through which early development evolves.

evolutionary biology↗

Patterns of evolution of TRIM genes highlight the evolutionary plasticity of antiviral effectors in mammals

The innate immune system of mammals is formed by a complex web of interacting proteins, which together constitute the first barrier of entry for infectious pathogens. Genes from the E3-ubiquitin ligase tripartite motif (TRIM) family have been shown to play an important role in the innate immune system by restricting the activity of different retrovirus species. For example, TRIM5 and TRIM22, have both been associated with HIV restriction, and are regarded as crucial parts of the antiretroviral machinery of mammals. Our analyses of positive selection corroborate the great significance of these genes for some groups of mammals. However, we also show that many organisms lack TRIM5 and TRIM22 altogether. By analyzing a large number of mammalian genomes, here we provide the first comprehensive view of the evolution of these genes in eutherians, showcasing that the pattern of accumulation of TRIM genes has been dissimilar across mammalian orders. Our data suggests that these differences are caused by evolutionary plasticity of the immune system of eutherians, which have adapted to use different strategies to combat retrovirus infections. Altogether, our results provide insights into the dissimilar evolution of a representative family of restriction factors, highlighting a great example of adaptive and idiosyncratic evolution in the innate immune system.

evolutionary biology↗

Neutralizing antibody-independent immunity to SARS-CoV-2 in hamsters and hACE-2 transgenic mice immunized with a RBD/Nucleocapsid fusion protein

The nucleocapsid (N) and the receptor binding domain (RBD) of the Spike (S) proteins elicit robust antibody and T cell responses either in vaccinated or COVID-19 convalescent individuals. We generated a chimeric protein that comprises the sequences of RBD from S and N antigens (SpiN). SpiN was highly immunogenic and elicited a strong IFN{gamma} response from T cells and high levels of antibodies to the inactivated virus, but no neutralizing antibodies. Importantly, hamsters and the human Angiotensin Convertase Enzyme-2-transgenic mice immunized with SpiN were highly resistant to challenge with the wild type SARS-CoV-2, as indicated by viral load, clinical outcome, lung inflammation and lethality. Thus, the N protein should be considered to induce T-cell-based immunity to improve SARS-CoV-2 vaccines, and eventually to circumvent the immune scape by variants.

immunology↗