Biology subjects

Farassat, N.

Publications and source records attributed to Farassat, N..

3 recordsLinked to original sources

bioRxiv2022

Geometrical factors determining dendritic domain intersection between neurons: a modeling study

Overlap between dendritic trees of neighboring neurons is a feature of nervous systems. Overlap allows neurons to share common afferences and defines the topography of the circuit they belong to. Proximity is also a requirement for dendritic communication, including dendro-dendritic synaptic contacts. We simulated overlap dynamics between pairs of ventral tegmental area dopamine neurons, a population characterized by diverse and extensive dendritic domains. Using each neurons 3D convex hull (CH) as a proxy for dendritic domain size and shape, we examined intersection versus cell-to-cell distance curves for 210 pairs of neurons, and found that decay dynamics were diverse and complex, indicating that intersection between real dendritic domains does not comply with spherical or isotropic shape assumptions. We re-examined intersection dynamics for the same 210 pairs, but this time with either: a) a normalized volume corresponding to the average volume of all CHs, b) normalized shapes, using an average CH shape, or CHs from neurons exhibiting average dendritic distribution, isotropy or morphology, or c) a normalized cell body position, which we artificially placed in each CHs centroid. All three interventions significantly increased pair intersection and simplified decay dynamics, yet shape normalization had the strongest influence. Critically, shape uniformity was also the most relevant factor for increased dendritic domain pair intersection using the neurons original brain position and distances. We applied this experimental approach to other populations using reconstructions from neuromorpho.org database and found that shape and intersection dynamics were cell-type dependent. We conclude that intersection between neurons is not only maximized by proximity, but that individual-specific dendritic domain geometries have a profound impact too. The results predict that one biological solution for circuits requiring selective connectivity is to exhibit greater heterogeneity in size, cell body location, and especially shape, among their constituent neuronal elements.

neuroscience↗

bioRxiv2021

Kv4.3 channel downregulation mediates chronic post-lesional pacemaker acceleration in surviving dopamine substantia nigra neurons

Dopamine (DA) neurons in the substantia nigra (SN) control several essential functions, including the voluntary movement, learning and motivated behavior. Healthy DA SN neurons show diverse firing patterns in vivo, ranging from slow pacemaker-like activity (1-10 Hz) to transient high frequency bursts (<100 Hz), interspersed with pauses that can last hundreds of milliseconds. Recent in vivo patch experiments have started to reveal the subthreshold mechanisms underlying this physiological diversity, but the impact of challenges like cell loss on the in vivo activity of adult DA SN neurons, and how these may relate to behavioral disturbances, are still largely unknown. We investigated the in vivo electrophysiological properties of surviving SN DA neurons after partial unilateral 6-OHDA lesions, a single-hit, non-progressive model of neuronal cell loss. We show that mice subjected to this model have an initial motor impairment, measured by asymmetrical rotations in the open field test, which recovered over time. At 3 weeks post-lesion, when open field locomotion was strongly impaired, surviving DA SN neurons showed a compressed in vivo dynamic firing range, characterized by a 10-fold reduction of in vivo burst firing compared to controls. This in vivo phenotype was accompanied by pronounced in vitro pacemaker instability. In contrast, in the chronic post-lesion phase (>2 months), where turning symmetry in open field locomotion had recovered, surviving SN DA neurons displayed the full dynamic range of in vivo firing, including in vivo bursting, similar to controls. The normalized in vivo firing pattern was associated with a 2-fold acceleration of stable in vitro pacemaking, mediated by Kv4.3 potassium channel downregulation. Our findings demonstrate the existence of a homeostatic pacemaker plasticity mechanism in surviving DA SN neurons after pronounced cell loss.

neuroscience↗

bioRxiv2019

In vivo functional diversity of midbrain dopamine neurons within identified axonal projections

The functional diversity of midbrain dopamine (DA) neurons ranges across multiple scales, from differences in intrinsic properties and synaptic connectivity to selective task engagement in behaving animals. Distinct in vitro biophysical features of DA neurons have been associated with different axonal projection targets. However, it is unknown how this translates to different firing patterns of projection-defined DA subpopulations in the intact brain. We combined retrograde tracing with single-unit recording and juxtacellular labelling in mouse brain to create the first single cell-resolved in vivo functional topography of the midbrain DA system. We identified surprising differences in burst firing among those DA neurons projecting to dorsolateral striatum, which were organized along the medio-lateral substantia nigra (SN) axis. Furthermore, burst properties also differentiated DA neurons in the medial SN that projected either to dorsal or ventral striatum. In contrast, DA neurons projecting to lateral shell of nucleus accumbens displayed identical firing properties, irrespective of whether they were located in the SN or ventral tegmental area (VTA), thus breaching classical anatomical boundaries. Finally, we found robust differences in mean firing rates and pause durations among VTA DA neurons projecting to either lateral or medial shell of nucleus accumbens. Together, our data set establishes a high-resolution functional landscape of midbrain DA neurons, which will facilitate the identification of selective functions and pathophysiological changes within the midbrain DA system.

neuroscience↗