Biology subjects

Fady, P.-E.

Publications and source records attributed to Fady, P.-E..

3 recordsLinked to original sources

bioRxiv2026

Molecular dynamics simulations demonstrate reduced antibiotic affinity to mirror bacterial targets

"Mirror life", self-replicating organisms composed of non-natural-chirality biomacromolecules, presents a future threat with potentially global consequences. Consequently, there is strong agreement among experts that it should not be created. However, there is some disagreement over how effective existing medical countermeasures might prove against mirror bacteria in the event that they were created. Here, we leverage computational chemistry methods including docking and molecular dynamics to determine the likely binding efficacy of existing antibiotics against natural and mirror bacterial protein targets. We find that most existing antibiotics fail to bind to mirror bacterial protein targets, unlike their natural-chirality targets. This suggests altered binding of current medical countermeasures, which may impact the antimicrobial activity against mirror bacteria were the latter were created.

molecular biology↗

bioRxiv2026

Evaluating AI-Assisted Customer Verification for Synthetic Nucleic Acid Screening

Legitimacy screening, the process of verifying the identity and purpose of customers ordering synthetic nucleic acids, is a primary safeguard against the misuse of synthetic biology. However, the associated costs discourage the adoption of screening practices. To evaluate whether AI tools can facilitate this process, we tested five large language models on five verification tasks using customer profiles of life sciences researchers from around the world. We compared AI performance against an expert human baseline on flag accuracy, source quality, source fidelity, and cost. Flag accuracy of the best-performing model (Gemini 2.5 Pro with four bibliographic and sanctions APIs) was statistically indistinguishable from the human baseline at 90.2% and 89.0% (n = 41). Gemini 2.5 Pro performed at or above the human baseline on source quality and fidelity, at roughly one-tenth of the cost ($1.18 vs. $14.04 per customer). For information-gathering tasks, which excluded the human review step, costs averaged $0.23 per customer, around 50 times cheaper than human screening. These results support piloting AI assistance at the information-gathering step of legitimacy screening at providers of synthetic nucleic acids and other dual-use biotechnology products, with human reviewers retaining authority over follow-up communication and order fulfillment decisions.

synthetic biology↗

bioRxiv2025

Molecular dynamics simulations demonstrate reduced antibiotic affinity to mirror bacterial targets

"Mirror life", self-replicating organisms composed of non-natural-chirality biomacromolecules, presents a severe future threat with potentially global consequences. Consequently, there is strong agreement among experts that it should not be created. However, there is some disagreement over how effective existing medical countermeasures might prove against mirror bacteria in the event that they were created. Here, we leverage computational chemistry methods including docking and molecular dynamics to determine the likely binding efficacy of existing antibiotics against natural and mirror bacterial protein targets. We find that existing most antibiotics fail to bind to mirror bacterial protein targets, unlike their natural chirality targets. This suggests that current medical countermeasures would not successfully exert an antimicrobial activity against mirror bacteria if the latter were created. Our results motivate further policy advocacy to curtail research that directly leads to the creation of mirror life.

biochemistry↗