Biology subjects

Faber, M.

Publications and source records attributed to Faber, M..

3 recordsLinked to original sources

bioRxiv2020

Comparative transcriptomics and host-specific parasite gene expression profiles inform on drivers of proliferative kidney disease

The myxozoan parasite, Tetracapsuloides bryosalmonae has a two-host life cycle alternating between freshwater bryozoans and salmonid fish. Infected fish can develop Proliferative Kidney Disease (PKD), characterised by a gross lymphoid-driven kidney pathology in wild and farmed salmonids. To facilitate an in-depth understanding of T. bryosalmonae-host interactions, we have adopted a two-host parasite transcriptome sequencing approach to minimize host contamination in the absence of a complete T. bryosalmonae genome. Parasite contigs common to both infected hosts (the intersect transcriptome; 7,362 contigs) were typically AT-rich (60-75% AT). 5,432 contigs within the intersect were annotated with 1,930 unannotatde contigs encoding for unknown transcripts. We have focused on transcripts encoding proteins involved in; nutrient acquisition, host-parasite interactions, development, and cell-to-cell communication or proteins of unknown function, establishing their potential importance in each host by RT-qPCR. Host-specific expression profiles were evident, particularly in transcripts encoding proteases and proteins involved in lipid metabolism, cell adhesion, and development. We confirm for the first time the presence of homeobox proteins and a frizzled homologue in myxozoan parasites. The novel insights into myxozoan biology that this study reveals will help to focus research in developing future disease control strategies.

genomics↗

bioRxiv2020

Overlapping connectivity gradients in the anterior temporal lobe underlie semantic cognition

Convergent evidence from neuroimaging, computational, and clinical research has shown that the anterior temporal lobe (ATL) is critically involved in two key aspects of semantic cognition: the representation of semantic knowledge, and the executive regulation of this knowledge. Both are necessary for integrating features to understand concepts, and to integrate concepts to understand discourse. Here, we tested the hypothesis that these differential aspects of integration map onto different patterns of ATL connectivity. Specifically, we hypothesized that there are two overlapping modes of functional connectivity of the ATL that each predict distinct aspects of semantic cognition on an individual level. We used a novel analytical approach (connectopic mapping) to identify the first two dominant modes connection topographies (i.e. maps of spatially varying connectivity) in the ATL in 766 participants (Human Connectome Project), and summarized these into 16 parameters that reflect inter-individual differences in their functional organization. If these connection topographies reflect the ATLs functional multiplicity, then we would expect to find a dissociation where one mode (but not the other) correlates with cross-modal matching of verbal and visual information (picture vocabulary naming), and the other (but not the former) correlates with how quickly and accurately relevant semantic information is retrieved (story comprehension). Our analysis revealed a gradient of spatially varying connectivity along the inferior-superior axis, and secondly, an anterior to posterior gradient. Multiple regression analyses revealed a double dissociation such that individual differences in the inferior-superior gradient are predictive of differences in story comprehension, whereas the anterior-posterior gradient maps onto differences in picture vocabulary naming, but not vice versa. These findings indicate that overlapping gradients of functional connectivity in the ATL are related to differential behaviors, which is important for understanding how its functional organization underlies its multiple functions.

neuroscience↗

bioRxiv2018

The functional organisation of the hippocampus along its long axis is gradual and predicts recollection

Understanding the functional organisation of the hippocampus is crucial for understanding its role in cognition and disorders in which it is implicated. Different views have been proposed of how function is distributed along its long axis: one view suggests segregation, whereas the alternative view postulates a more gradual organisation. Here, we applied a novel connectopic mapping data-analysis approach to the resting-state fMRI data of participants of the Human Connectome Project, and demonstrate that the functional organisation of the hippocampal longitudinal axis is gradual rather than segregated into parcels. In addition, we show that inter-individual variations in this gradual organisation predicts variations in recollection memory better than a characterisation based on parcellation. These results present an important step forward in understanding the functional organisation of the human hippocampus and have important implications for translating between rodent and human research.

neuroscience↗