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Essner, J.

Publications and source records attributed to Essner, J..

2 recordsLinked to original sources

Collagen4 fluorescent protein knock-in lines reveal remodeling of cardiovascular basement membranes

Basement membranes (BMs) are specialized extracellular matrix structures that provide structural support and regulate cellular behavior. Although BM composition and organization are dynamically remodeled during development and tissue regeneration, the remodeling of individual BM components in the cardiovascular system (CVS) remain incompletely characterized. Here, we focused on Collagen4 (Col4), a major structural component of BMs, to investigate its remodeling during cardiovascular development and regeneration. To monitor the remodeling of Col4 in vivo, the Venus fluorescent tag was integrated in frame into the zebrafish endogenous col4a1 and col4a2 genes, enabling live confocal imaging of expression. Our data reveal dynamic patterns of Col4a1 and Col4a2 within the developing CVS, with deposition progressively increasing as vascular and cardiac structures develop and mature during both development and regeneration. In the regenerating heart, Col4a2 accumulated at the injury site during early stages of regeneration and became increasingly associated with the newly regenerated myocardium. Together, these findings demonstrate that Col4 deposition is dynamically reorganized across developmental and regenerative stages of CVS and describe new tools for following Col4 dynamics in vivo.

developmental biology↗

The Vertebrate Codex Gene Breaking Protein Trap Library For Genomic Discovery and Disease Modeling Applications

The zebrafish is a powerful model to explore the molecular genetics and expression of the vertebrate genome. The gene break transposon (GBT) is a unique insertional mutagen that reports the expression of the tagged member of the proteome while generating Cre-revertible genetic alleles. This 1000+ locus collection represents novel codex expression data from the illuminated mRFP protein trap, with 36% and 87% of the cloned lines showcasing to our knowledge the first described expression of these genes at day 2 and day 4 of development, respectively. Analyses of 183 molecularly characterized loci indicate a rich mix of genes involved in diverse cellular processes from cell signaling to DNA repair. The mutagenicity of the GBT cassette is very high as assessed using both forward and reverse genetic approaches. Sampling over 150 lines for visible phenotypes after 5dpf shows a similar rate of discovery of embryonic phenotypes as ENU and retroviral mutagenesis. Furthermore, five cloned insertions were in loci with previously described phenotypes; embryos homozygous for each of the corresponding GBT alleles displayed strong loss of function phenotypes comparable to published mutants using other mutagenesis strategies (ryr1b, fras1, tnnt2a, edar and hmcn1). Using molecular assessment after positional cloning, to date nearly all alleles cause at least a 99+% knockdown of the tagged gene. Interestingly, over 35% of the cloned loci represent 68 mutants in zebrafish orthologs of human disease loci, including nervous, cardiovascular, endocrine, digestive, musculoskeletal, immune and integument systems. The GBT protein trapping system enabled the construction of a comprehensive protein codex including novel expression annotation, identifying new functional roles of the vertebrate genome and generating a diverse collection of potential models of human disease.

genomics↗