Biology subjects

Errbii, M.

Publications and source records attributed to Errbii, M..

8 recordsLinked to original sources

bioRxiv2026

Population genomics of the inquiline social parasite Acromyrmex insinuator and its leaf-cutting ant hosts A. echinatior and A. octospinosus reveals cryptic differentiation and reduced efficiency of selection in the parasite

Inquiline social parasites usurp colonies of closely related host ants to exploit their social resources. They are almost invariably rare, patchily distributed and difficult to study. Here we build on almost 25 years of Panamanian fieldwork on the social parasite Acromyrmex insinuator and its A. echinatior and A. octospinosus hosts, to perform a population genomic analysis to test hypotheses that have been suggested to shape the evolution of inquiline social parasites: 1. Do these parasites indeed have extremely reduced effective population size? 2. Does extant genetic variation at coding and non-coding sites carry signatures of erosion of adaptive potential? 3. Has A. insinuator become fully reproductively isolated from its sympatric hosts and how closely related are its primary and secondary host? We show that the two host species are completely distinct and that genetic diversity and effective population size of the social parasite are dramatically reduced despite ongoing but very minor recent gene flow between the parasite and its primary host A. echinatior. We also demonstrate that non-synonymous codon-sites evolved at rates nearly indistinguishable from synonymous codon-sites. This indicates a significant reduction in the efficiency of natural selection consistent with inquiline social parasite lineages generally being evolutionarily short-lived. We finally uncover clear sub-structure in the parasite population, with two genetically distinct lineages occurring in sympatry in the Panama Canal Zone, and with significant differences in their likelihood of exploiting the secondary host A. octospinosus and the primary host from which they segregated sympatrically ca. 1 MYA.

genomics↗

bioRxiv2026

Cavalcade-Mediated Resistance Alters Tomato-Root-Knot Nematode Interactions and Limits Nematode Infection

Meloidogyne incognita is a major plant-parasitic nematode responsible for substantial yield losses in tomato worldwide. Current control strategies rely heavily on chemical nematicides, which raise environmental concerns and face increasing regulatory restrictions, underscoring the need for sustainable alternatives. Here, we show that foliar application of an aqueous extract from cavalcade (Centrosema pascuorum) enhances tomato resistance against M. incognita. Pre-inoculation treatment with cavalcade extract prior to inoculation with root-knot nematodes (RKN) significantly reduced root gall formation, delayed nematode development, and limited second-stage juvenile penetration compared with untreated infected controls, whereas post-inoculation application conferred partial protection. Transcriptomic analyses revealed the activation of multiple defense-related pathways, including salicylic acid- and jasmonic acid-associated signaling and phenylpropanoid metabolism, supported by the upregulation of PR1 and PAL. Additional induction of lipid transfer proteins, leucine-rich repeat receptor-like kinases, resistance proteins, mitochondrial calcium uniporter, and GA2ox5 suggests coordinated activation of pathogen recognition, calcium signaling, and hormone-regulated defense networks. These findings demonstrate that cavalcade extract primes broad-spectrum defense responses in tomato and highlight its potential as an environmentally sustainable strategy for nematode management.

plant biology↗

bioRxiv2025

Genomes of ancient asexual mites appear streamlined in their architecture

The long-term persistence of obligate asexual lineages represents one of the most enduring and critical paradoxes in evolutionary biology. Sexual reproduction, through meiotic recombination and segregation, enables the efficient removal of deleterious mutations and facilitates rapid adaptation to shifting environmental pressures. Lineages that lose sex are therefore classically predicted to experience genomic decay and face rapid extinction. Oribatid mites (Acari, Sarcoptiformes) represent a unique system for testing these predictions, as they feature multiple, ancient, and independent transitions to asexuality, providing a natural experiment on the evolutionary fate of asexual genomes. We compared four sets of sister sexual and asexual species using high-quality nuclear genome assemblies to investigate the genomic consequences of long-term asexuality. Our study revealed a profound, reproductive-mode-dependent dichotomy in the evolution of genome architecture. Contrary to their expected genomic decay, asexual species have mostly streamlined genomes with less novel genes than their sexual sister species. In contrast, sexual species have acquired genetic innovations, encompassing both gene and transposable element content. These results challenge classical expectations of genomic deterioration in asexual species and might explain the long-term evolutionary persistence of oribatid mites.

genomics↗

bioRxiv2025

Epigenetic reprogramming by 5-aza-dC alters gene methylation and suppresses aggression in founding queens of the California harvester ant Pogonomyrmex californicus.

Epigenetic mechanisms are increasingly recognized as key drivers of phenotypic plasticity in social insects, where the caste and function of an individual is usually not determined by its genotype. These mechanisms may also regulate variation in social behavior or interactions and ultimately social organization. We experimentally manipulated genome-wide DNA methylation in founding queens of Pogonomyrmex californicus using the DNA methylation inhibitor decitabine (5-aza-20-deoxycytidine), to investigate the effect of DNA demethylation on aggressive interactions during colony founding in P. californicus, leading either to colonies with single (i.e., monogyny) or multiple queens (i.e., polygyny). Genome-wide methylation profiling showed widespread gene hypomethylation in treated queens, including those encoding the DNA methyltransferases DNMT1 and DNMT3. Furthermore, treated queens exhibited significantly reduced aggression in queen-queen interactions compared to untreated ones. Interestingly, genes linked to energy metabolism showed increased methylation in aggressive founding queens compared to non-aggressive queens. Our results highlight a potential epigenetic basis for behavioral and social variation, contributing to the understanding of social niche polymorphism in ants.

animal behavior and cognition↗

bioRxiv2025

The impact of a fatty acid synthase gene in regulating a complex multifunctional trait essential for survival and sexual communication

The genetic basis of multi-functional traits shaped by both natural and sexual selection remains poorly understood. In insects, cuticular hydrocarbons (CHCs) are an excellent example of such traits, providing protection against different micro-climatic conditions while simultaneously encoding cues predominantly used in sexual signaling. The fatty acid synthase (fas) gene family has been implied as an important cornerstone in initiating and maintaining CHC functionality, whereas their exact biosynthetic and regulatory mechanisms have remained poorly understood. Here, we characterize a single fatty acid synthase gene (fas3) impacting the main CHC functions in the parasitoid wasp model organism Nasonia vitripennis. Knockdown of fas3 significantly decreases wasp survival under desiccation stress while also completely depleting sexual attractiveness of female wasps, where this trait naturally functions as sex pheromone. Transcriptomic analyses revealed that fas3 regulates other fas and CHC-associated genes, as well as key biosynthetic pathway hubs. We also identified striking sex-specific expression differences in fas3 across individual developmental stages, suggesting divergent functional roles of this gene in males and females. These findings largely advance our knowledge on the multi-functionality of fas genes in governing survival and sexual signaling and underscore their relevance for future studies on metabolomics, ecological adaptation, and sexual communication. Author SummaryTraits that serve both adaptive and reproductive functions--such as those involved in survival and mating success--are often complex, and their genetic foundations remain poorly understood. In insects, chemical compounds on the outer cuticle represent a prime example: they help prevent desiccation and act as key sexual signals. In this study, we investigate the gene fas3, a member of the fatty acid synthase family, in the parasitoid wasp Nasonia vitripennis, whose knockdown drastically reduces these surface chemicals. Consequently, both of their natural functionalities, namely enhancement of survival in dry conditions and female sexual attractiveness, are severely impaired. Transcriptomic analysis further revealed that fas3 also regulates multiple other genes, including those in further major biosynthetic pathways. Our findings shed light on how a single gene can coordinate the expression of multifunctional traits, contributing to both ecological adaptation and sexual communication.

genetics↗

bioRxiv2025

Castes and developmental stages of the harvester ant P. californicus differ in genome-wide and gene specific DNA methylation

DNA methylation in social insects has been proposed as a key mechanism underlying both reproductive and non-reproductive caste determination by regulating gene expression in response to environmental cues. So far, studies on DNA methylation in social insects have yielded mixed results, with some studies finding no effect on caste determination or worker behaviour while others have reported such effects. In order to link DNA methylation to either process one first needs to show variation in DNA methylation between castes and developmental stages. This study determined cytosin methylation in a CpG context (CmpG) in the harvester ant Pogonomyrmex californicus using ONT (Oxford Nanopore Sequencing) sequencing in larvae, pupae, workers and queens, moreover we compared accuracy of methylation with the gold standard WGBS (Whole Genome Bisulfite Sequencing). Methylation sites were highly correlated between WGBS and ONT (r2=0.8). Overall, the P. californicus genome showed low levels of methylation (3%) which is comparable to what has been found in other Hymenopterans. DNA methylation was significantly increased in gene bodies and in particular exons and showed a significant decrease at the transcription start site and promotor region. Introns, intergenic regions and transposable elements have the lowest levels of DNA methylation. Gene body methylation was positively correlated with gene expression in queens, which is in accordance with other studies and the opposite of what is found in vertebrate studies. Both castes and developmental stages showed significant variation and differences in gene body methylation frequencies. Furthermore, castes and stages which have a high metabolic rate (queens and pupae) show higher DNA methylation, suggesting plasticity and an active role of DNA methylation in gene regulation and in extension caste regulation.

genomics↗

bioRxiv2023

Darwin's "neuters" and the evolution of the sex continuum in a superorganism

Ant castes are an amazing example of phenotypic plasticity. In worker-destined embryos of the ant Cardiocondyla obscurior, the default female developmental trajectory is interrupted even before the gonadal precursor cells acquire a sexual identity. miRNA and mRNA expression in embryos reveal three distinct phenotypic entities: males, females, and "neuters", as Darwin coined the worker caste in "On the Origin of Species". Based on these results we propose that haplodiploidy, in conjunction with insect sex determination, allows for the expression of a third dimension on the sex continuum, thus facilitating the evolution of individuals which develop traits their parents do not have. One sentence summarySex and caste differentiation begin during the same embryonic developmental window in the ant Cardiocondyla obscurior.

evolutionary biology↗

bioRxiv2021

Genomic architecture and evolutionary dynamics of a social niche polymorphism in the California harvester ant, Pogonomyrmex californicus

Social insects vary considerably in their social organization both between and within species. In the California harvester ant, Pogonomyrmex californicus (Buckley 1867), colonies are commonly founded and headed by a single queen (haplometrosis, primary monogyny). However, in some populations in California (USA), unrelated queens cooperate not only during founding (pleometrosis) but throughout the life of the colony (primary polygyny). The genetic architecture and evolutionary dynamics of this complex social niche polymorphism (haplometrosis vs pleometrosis) have remained unknown. Here, we provide a first analysis of its genomic basis and evolutionary history using population genomics comparing individuals from a haplometrotic population to those from a pleometrotic population. We discovered a recently evolved (< 200 k years), 8 Mb non-recombining region segregating with the observed social niche polymorphism. This region shares several characteristics with supergenes underlying social polymorphisms in other socially polymorphic ant species. However, we also find remarkable differences from previously described social supergenes. Particularly, four additional genomic regions not in linkage with the supergene show signatures of a selective sweep in the pleometrotic population. Within these regions, we find for example genes crucial for epigenetic regulation via histone modification (chameau) and DNA methylation (Dnmt1). These results suggest that social morph in this species is a polygenic trait involving a potential young supergene. Further studies targeting haplo- and pleometrotic individuals from a single population are however required to conclusively resolve whether these genetic differences underlie the alternative social phenotypes or have emerged through genetic drift.

evolutionary biology↗