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Erdogan, M.

Publications and source records attributed to Erdogan, M..

2 recordsLinked to original sources

Chemotype diversity of foliar volatile emissions in Cork oak suggests independent geographic variations in quality and quantity

Knowledge of the intraspecific variability of volatiles produced by plants is central for estimating their fluxes from ecosystems and for understanding their evolution in an ecological and phylogenetic context. Past studies suggested that leaf volatile emissions from Cork oak (Quercus suber L.) exhibit a particular high degree of qualitative and quantitative polymorphism. However, the extent of inherent emission variability across its range is not known. We investigated leaf emissions and ecophysiological variables of 241 Cork oak seedlings from ten provenances. To minimize environmental influences, emissions were determined at 30 {degrees}C and saturating light on seed-grown saplings of similar age grown under the same conditions. All individuals, except for three apparent non-emitters, released the same five monoterpenes at a rate of 2559 {+/-} 120 ng m-2 s-1. Northern provenances tended to have higher mean emission rates and lower photosynthetic rates than southern populations, resulting in significant differences in their apparent carbon losses by volatile emissions. Independently, the emission composition varied discontinuously among individuals according to three distinct chemotypes, indicating inherent differences in the activity of two types of monoterpene synthases: one producing -, {beta}-pinene and sabinene, and the other limonene (plus myrcene as a by-product). Chemotype frequencies differed among provenances, particularly between South-Eastern Mediterranean and South-Western Atlantic provenances. Regarding ecophysiological leaf traits, we found no significant difference between chemotypes. The study confirms that Cork oak is a strong monoterpene emitter, showing independent intraspecific variability in emission quality and quantity, with non-emitters being rare. Comparison of the emission variability with those reported for other oak species suggests that an ancestral Pinene/sabine chemotype has diversified within the oak subgenus Cerris during its radiation. This diversification is less pronounced in Cork oak than in other sympatric oaks, possibly due to differential fragmentation and expansion of their ranges in the past.

plant biology↗

A genotype-first approach identifies variants for orofacial clefts and other phenotypes in dogs

Dog breeding promotes within-group homogeneity through conformation to strict breed standards, and also drives between-group heterogeneity in pursuit of characteristic breed traits. There are over 350 recognized dog breeds that provide the foundation for investigating the genetic basis of phenotypic diversity. Typically, breed standard phenotypes such as stature, fur length, and craniofacial structure are analyzed in genetic association studies. However, such analyses are limited to the assayed phenotypes, leaving difficult to measure phenotypic subtleties potentially overlooked. In this study, the genotype-first approach was adapted to the dog genome to investigate coding variation from over 2000 dogs, leading to discoveries of new mutations related to craniofacial morphology and stature. Breed-enriched variants were prioritized according to gene constraint, which was calculated using a mutation model derived from trinucleotide substitution probabilities in the dog. Among the discovered variants was a splice-acceptor mutation in PDGFRA associated with bifid nose, a characteristic trait of Catalburun dogs, implicating the genes role in midline closure, and a frameshift mutation in LCORL associated with large canine body size, thus highlighting the importance of allelic heterogeneity in selection for breed traits. Most priority variants were not associated with genomic signatures for breed differentiation, as these regions were enriched for constrained genes intolerant to nonsynonymous variation, suggesting a model of breed phenotype diversification based on regulatory changes to essential genes. Identification of trait-associated variants in dogs informs new biological roles for genes. Improved collection of breed disease risk data, along with increased breed representation, will drive further discoveries.

genomics↗