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Engel, N.

Publications and source records attributed to Engel, N..

5 recordsLinked to original sources

Four Core Genotypes Mice Exhibit Quantitative Differences in T and B Cell Subpopulations compared to Wild-type Mice.

It has been well established that females have a more active immune system. Females respond better to vaccines, are more resistant to somatic cell cancers, display better pathogen responses, present antigens better, and, conversely, are more prone to autoimmune diseases compared to male counterparts. Though these trends have been observed across normal and pathogenic states, the mechanisms underlying these sex differences have not been fully explained. Some hormonal effects on immune cell populations have been reported, but much less is known about effects contributed by genes on the sex chromosomes, for example those that are more highly expressed in females due to X inactivation escape, or Y-linked genes those unique to males. Here we use the Four Core Genotypes (FCG) mouse model and wildtype XY male mice to disentangle the effects of sex hormones, sex chromosome complement, and their interactions on baseline B and T cell populations in the periphery and T cells in the thymus. We test the effects of a previously described X-Y chromosomal translocation and those of the Sry transgene insertion on chromosome 3. We observe that mice harboring the Sry transgene show significant depletion of peripheral CD8+ T cell subpopulations. In the thymus, the XY XY,but not the XX males, show significant decrease to both CD8+ and CD4+ single positive T cells and an increase to CD4/CD8 double positive T cells. We also show that Y chromosome-bearing mice exhibit depletion in splenic marginal zone B cells. Our data suggests that the gonadal sex is the strongest contributor to this phenotype. Our studies define a critical framework for the use of this model and provide valuable data to assess the use of the FCGs model, especially for diseases involving the immune response.

immunology↗

Sex chromosomes and sex hormones contribute jointly and independently to sex biases in cardiac development.

Congenital heart defects are highly sex-biased, and although the regulatory networks underlying the differentiation of cardiac progenitors are well established, the sex differences during early stages of cardiogenesis have been largely understudied. Traditionally, sex differences are attributed to the gonadal sex hormones, but the unequal sex chromosome complement (i.e., XX versus XY) contributes to sex-biased gene expression from soon after fertilization and across the lifespan. We leveraged the Four Core Genotypes (FCG) mouse model to investigate gonadal and sex chromosome effects on the transcriptome during cardiac development. We found significant sex-biased gene expression at all developmental stages, including in 10.5 dpc (days post-coitum) embryos, before the gonads have formed. Our studies reveal that sex differences in the transcriptome are governed by both sex chromosome and gonadal sex hormone effects and their interactions in 16.5 dpc, neonates, and adults, to differing degrees depending on the stage. Transcriptional and epigenetic factors were among the differentially expressed genes, suggesting the existence of sex-specific subnetworks. The adult cardiac epigenome was also investigated for differential H3K27Ac enrichment, revealing sex-biased chromatin states containing transcription factor binding sites regulated by sex chromosomes, gonadal hormones, and their combined effects. Several of these differentially enriched regions were found to overlap with known cardiac enhancers and correlated with differential expression of typical cardiac-specific genes.

developmental biology↗

SPT5 regulates Pol II pausing and elongation in different ways at early versus late embryonic stages

Transcription involves a cycle of initiation, pausing, elongation, and termination. SPT5 regulates both promoter proximal pausing and elongation, but how it orchestrates both steps during dynamic changes in gene expression remains unclear. Here, using Drosophila embryogenesis, we show that pausing both precedes and follows gene expression, while active transcription is accompanied by pause release. Optogenetic rapid depletion of SPT5 from the nucleus uncovered different sensitivities at different developmental stages. In early embryogenesis, SPT5 depletion caused a downstream shift in Pol II pausing to the +1 nucleosome, resulting in defective elongation and early termination. In late embryogenesis, it led to both up- and downregulation of expression, depending on the genes transcriptional and pausing state - upregulation is caused by pause release while downregulation is due to defective elongation. These changes are intensified when genes are increasing or decreasing their transcriptional state, indicating that SPT5 contributes to fine-tuning dynamic changes in gene expression.

genomics↗

Gradient of Wnt signaling facilitates Mef2 heterogeneity and limits commitment of the developmental muscle progenitor pool

During skeletal muscle development, the timing and extent of lineage commitment towards differentiation must be coordinated to ensure proper tissue formation while preserving undifferentiated progenitors for adult stem cell function. This balance requires spatial and temporal regulation of cell fate and transcriptional regulators to act as key mediators of lineage progression. The transcription factor Mef2 is a key activator of myogenic differentiation across vertebrates and invertebrates. However, the mechanisms that spatially restrict Mef2 expression within the developing niche to limit muscle progenitor (MP) commitment towards differentiation remains less well characterized. Using the developmental flight muscle progenitor niche in Drosophila, a system that parallels vertebrate myogenesis, we investigated the transcriptional and spatial regulation of MP fate at a developmental timepoint when Mef2 expression begins to rise but precedes overt differentiation. We identified a spatially distinct subpopulation of MPs with low Mef2 expression and elevated Wnt/{beta}-catenin signaling. Within the broader MP pool, graded Wnt activity emerged as a key source of Mef2 heterogeneity: high Wnt activity led to strong repression of Mef2 via Armadillo/{beta}-catenin and TCF-dependent regulation. Moderate Wnt activity, meanwhile, not only repressed Mef2 expression but also sustained expression of zfh1, a conserved transcription factor linked to MP maintenance and adult muscle stem cell identity. Contrary to its well-established role in promoting myogenesis, Wnt/{beta}-catenin signaling in this early spatial context instead promotes a less committed state, leading to a subset of MPs with particular low Mef2 level. These findings highlight greater spatial complexity within the developing muscle progenitor niche than previously recognized, with potential implications for conserved strategies of muscle stem cell regulation across species.

developmental biology↗

Comparative developmental genomics of sex-biased gene expression in early embryogenesis across mammals

Mammalian gonadal sex is determined by the presence or absence of a Y chromosome. In males, the Y chromosome initiates male gonadogenesis and the subsequent production of male-specific hormones defines the male state of each cell in the organism. In females, the lack of a Y chromosome and the presence of two X chromosomes triggers the development of female gonads, hormones, and cellular identity. However, sex chromosome-linked genes encoding dosage-sensitive transcription and epigenetic factors are expressed well before gonad formation and have the potential to establish sex-biased expression. Here, we apply a comparative bioinformatics analysis on published single-cell datasets from mouse and human during very early embryogenesis-from two-cell to preimplantation stages-to characterize sex-specific signals and to assess the degree of conservation among early-acting sex-specific genes and pathways. Clustering and regression analyses of gene expression across samples reveal that sex initially plays a significant role in overall gene expression patterns at the earliest stages of embryogenesis. In addition, gene expression signals from male and female gametes during fertilization may still be present. Although these transcriptional sex effects rapidly diminish, the sex-biased expression of epigenetic enzymes has the potential to establish sex-specific patterns that persist beyond preimplantation. Sex-biased genes appear to form sex-specific protein-protein interaction networks across preimplantation stages in both mammals. While the distribution of sex-differentially expressed genes (sexDEGs) in early embryonic stages are similar in mice and humans, the genes involved are generally different. Non-negative matrix factorization (NMF) on male and female transcriptomes generated clusters of genes with similar expression patterns across sex and developmental stages including post-fertilization, epigenetic, and preimplantation ontologies conserved between mouse and human. This comparative study uncovers much earlier than expected sex-specific signals in mouse and human embryos that pre-date hormonal signaling from the gonads. These early signals are diverged with respect to orthologs yet conserved in terms of function with important implications in the use of genetic models for sex-specific disease.

developmental biology↗