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Emami, S.

Publications and source records attributed to Emami, S..

4 recordsLinked to original sources

A conserved mitochondrial role for cyclin C in mediating oxidative stress-induced cell death in yeast

Cyclin C is a highly conserved component of the Mediator kinase module that regulates transcription through CDK8 stimulation. In addition, the yeast (Cnc1) and human (CCNC) cyclin C exhibit stress-induced mitochondrial translocation to stimulate fission through direct interaction with the dynamin-like GTPase DRP1 (mammals) or Dnm1 (yeast). Gene ablation studies revealed that both Cnc1 and CCNC are required for cell damage-induced regulated cell death (RCD). To determine the relative contributions of cyclin Cs transcriptional and mitochondrial roles in promoting RCD, this study utilized docking simulation algorithms to predict interaction interfaces for CCNC-CDK8 and CCNC-DRP1 heterodimers. As expected, CCNC bound CDK8 through its amino terminal cyclin box domain while DRP1 associated with the second carboxyl cyclin box. Using these predictions, we used site directed mutagenesis on Cnc1 to separate these functions. Importantly, only the DRP1/Dnm1-interaction residues were important for RCD in yeast. Interestingly, although Dnm1 is required for RCD, its fission activity was not. Moreover, Dnm1 is still required for RCD even when Cnc1 is targeted to the mitochondria indicating it is not simply functioning as a tether. Finally, when expressed in yeast, the human CCNC efficiently induced fission and stimulated RCD. Moreover, these functions required predicted DRP1 interaction sites as well. In conclusion, these studies revealed that cyclin C separates its nuclear and mitochondrial activities by utilizing different cyclin box domains. Second, Dnm1-cyclin C interaction, and not transcriptional control, is critical for cyclin C-dependent RCD and this role is conserved from yeast to humans. Author SummaryThe cyclin C protein is found in all eucaryotes and exhibits two conserved functions. First cyclin C activates the CDK8 protein kinase to control transcription of genes involved in the stress response. Second, stress induces cyclin C translocation to the mitochondria where it induces fragmentation by stimulating the fission GTPase DRP1. Mitochondrial fission is an early step in the regulated cell death pathway. Importantly, cyclin C is required for stress-induced cell death raising the question of what the relative contribution of its transcription and mitochondrial roles is. To address this question, we generated mutations in the yeast cyclin C that interfered with its association with CDK8 or DRP1 without affecting the other. We found that the mitochondrial role, but not transcription, was required for cell death in yeast. In addition, when expressed in yeast, the human cyclin C also induced mitochondrial fission and cell death. Finally, although DRP1 is important for regulated cell death, its fission function is not. These results point to a highly conserved role for cyclin C in mediating regulated cell death at the mitochondria. In addition, these results point to a non-enzymatic role for DRP1 in executing the cell death pathway.

cell biology↗

Protection conferred by intraperitoneal Group A Streptococcus immunization relies on macrophages and IFN-γ but not on concurrent adaptive immune responses.

Group A Streptococcus (GAS; Streptococcus pyogenes) is an important bacterial pathogen estimated to cause over 700 million superficial infections and around 500.000 deaths due to invasive disease or severe post-infection sequelae in the world yearly. In spite of this major impact on society, there is currently no vaccine available against this bacterium. GAS strains can be separated into >200 distinct emm (M)-types, and protective immunity against GAS is believed to in part be dependent on type-specific antibodies. Here, we analyze the nature of protective immunity generated against GAS in a model of intraperitoneal immunization in mice. We demonstrate that multiple immunizations are required for the ability to survive a subsequent lethal challenge, and although significant levels of GAS-specific antibodies are produced, these are redundant for protection. Instead, our data show that the immunization-dependent protection in this model is induced in the absence of B and T cells, is accompanied by an altered cytokine profile upon subsequent infection and requires macrophages and the macrophage-activating cytokine IFN-{gamma}. To our knowledge these findings are the first to suggest that GAS has the ability to induce forms of trained innate immunity. Taken together, the current study reveals a novel mechanism of the innate immune system in response to GAS infections that potentially could be leveraged for future development of effective vaccines. Author summaryThe bacterium Group A Streptococcus (GAS) causes many hundred million infections and around 500.000 deaths in the world every year. GAS can give rise to a wide spectrum of diseases ranging from mild strep throat to life-threatening necrotizing fasciitis (often referred to as "flesh-eating disease"). There is currently no vaccine available for this pathogen, much due to our incomplete knowledge of how the immune system reacts to different GAS infections, what immune responses are in fact required for long-term protection and how these are generated. Here we show that protective immunity arising after immunization through the intraperitoneal (ip) cavity requires multiple injections using heat killed GAS. Surprisingly, although typical adaptive immune responses are activated and generate production of GAS-specific antibodies these are redundant for protection, which instead hinges on macrophages and the cytokine IFN-{gamma}. Our findings suggest that ip GAS immunizations trigger what is known as trained immunity, where innate immune cells become imprinted to respond with increased efficiency towards subsequent infection. Overall, these observations highlight a previously unknown ability of GAS to induce non-canonical forms of protective immunity, discoveries that may significantly contribute to our thinking about how the immune system reacts to such infections and broaden the scope for future vaccine strategies.

immunology↗

Use of Ganoderma lucidum grown on agricultural waste to remove antibiotics from water

Antibiotic effluents from farming and medical applications into waterways pose serious risks for antibiotic drug resistance, promoting a need for effective strategies of removal from the environment. This experiment uses a novel mycoremediation approach to remove antibiotic contamination in synthetic wastewater. A white rot fungus, Ganoderma lucidum, was grown on biomass formed by agricultural waste from California (almond shells, fava bean stalks). Water containing or lacking Ganoderma lucidum was inoculated with twenty antibiotics from six different classes. The extent of antibiotic removal was measured at baseline and after 3 days with ultra-high pressure liquid chromatography coupled to tandem mass-spectrometry. In water containing Ganoderma lucidum mycelial biomass, we found a significant reduction compared to the baseline of the concentration in six (three quinolones and three sulfonamides) out of twenty tested antibiotics by Day 3, with normalized changes ranging from -24.4% to -82.4%. The mycelial biomass was particularly effective in reducing the presence of three quinolone antibiotics, a class of highly used antibiotics recalcitrant to processes in wastewater treatment plants. Our findings provide a novel approach to degrade certain antibiotics from water. This strategy could become a key component of removing antibiotic pollution using agricultural waste as part of the solution.

microbiology↗

Assessing the matrix effects of pigmented and non-pigmented salmon during multi-residue antibiotic analysis with liquid chromatography coupled to tandem mass spectrometry

Several validated methods exist for the quantitation of antibiotics in seafood with ultra-high pressure liquid chromatography coupled with tandem spectrometry (UPLC-MS/MS). To our knowledge, none have explored the effects of co-eluting matrix components on the accuracy of quantitation. Such matrix effects could disproportionally change the ionization of analytes and their respective surrogate/internal standards during UPLC-MS/MS analysis, resulting in over-or under-estimation of antibiotic values. In this study, we measured matrix effects, alongside extraction recoveries for 30 antibiotics and their respective class-specific surrogate standards in Sockeye, King and Ivory (non-pigmented) salmon extracted using the QUEChERS method. A modified QUEChERS method involving dispersive or hydrophilic-lipophilic balance (HLB) solid phase extraction (SPE) was also tested on Sockeye salmon. Despite acceptable extraction recoveries for most antibiotics extracted using the QUEChERS method, significant matrix effects were observed for most antibiotic standards. Dispersive or HLB SPE clean-up did not improve analyte recoveries from Sockeye salmon, and in some cases, increased matrix effects. Accuracy and sensitivity were reduced when matrix effects were high. Our results demonstrate that matrix components in salmon cause matrix effects on antibiotics during UPLC-MS/MS analysis which could impact the accuracy and sensitivity of the analysis.

biochemistry↗