Biology subjects

Edwards, K. A.

Publications and source records attributed to Edwards, K. A..

4 recordsLinked to original sources

bioRxiv2026

A ratiometric biochemical framework reveals strain-specific metabolic allocation strategies in brook trout liver

Brook trout (Salvelinus fontinalis) exhibit strain-level variation in growth performance, environmental tolerance, and survival, yet the biochemical mechanisms underlying these differences remain poorly understood. We developed and applied a ratiometric biochemical framework integrating the pentose-phosphate pathway (PPP) and glutathione metabolism to characterize strain-specific hepatic metabolic organization in brook trout. Five strains reared under standardized conditions differed significantly in hepatic soluble protein density, glutathione pool size, total NADP(H) concentration, and activities of glucose-6-phosphate dehydrogenase (G6PDH), glutathione reductase (GR), and transketolase (TKT). These differences were not uniformly coordinated across pathways, demonstrating that metabolic phenotype cannot be inferred from individual biomarkers alone. Derived ratios describing oxidative-to-non-oxidative PPP capacity (G6PDH/TKT) and glutathione buffering relative to recycling capacity ((GSH+GSSG)/GR) resolved distinct patterns of metabolic allocation among strains. Despite shared ancestry, the Temiscamie (TEM) strain and its domestic x TEM hybrid (TXD) exhibited markedly divergent metabolic phenotypes, demonstrating that closely related strains can differ substantially in hepatic metabolic organization. Together, these findings identify relative allocation among interconnected metabolic pathways as an axis of physiologic diversity and establish a ratiometric approach for comparing metabolic organization across populations and species. Graphical abstractHepatic metabolic phenotypes of brook trout strains were characterized by integrating pentose phosphate pathway enzyme capacities, glutathione metabolism, NADP(H) availability, and soluble protein into a ratiometric framework. Ratios distinguish investment in oxidative versus non-oxidative PPP capacity (G6PDH/TKT), antioxidant buffering versus glutathione recycling capacity (total glutathione/GR), and hepatic protein density (soluble protein/liver mass), revealing distinct metabolic organization among strains. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=88 SRC="FIGDIR/small/743818v1_ufig1.gif" ALT="Figure 1"> View larger version (25K): org.highwire.dtl.DTLVardef@dc1b21org.highwire.dtl.DTLVardef@79528borg.highwire.dtl.DTLVardef@11a2805org.highwire.dtl.DTLVardef@398be9_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIA ratiometric framework was developed to characterize hepatic metabolic organization in brook trout C_LIO_LIGlutathione buffering and recycling capacity distinguish alternative redox phenotypes C_LIO_LIInvestment in oxidative and non-oxidative PPP capacity varies independently among strains C_LIO_LIG6PDH/TKT and total glutathione (GSH+GSSG)/GR reveal distinct metabolic phenotypes C_LIO_LIRatiometric indices provide a framework for interpreting redox metabolism and carbon allocation C_LI

biochemistry↗

bioRxiv2025

The Synergy between a Silver-Ruthenium Antimicrobial and aminoglycosides is based on severe macromolecular damage

The rise of multidrug-resistant (MDR) bacterial pathogens, including uropathogenic Escherichia coli (UPEC), highlights the urgent need for alternative treatment strategies to restore antibiotic efficacy. The silver-ruthenium antimicrobial AGXX(R) exerts potent bactericidal effects through the production of reactive oxygen species (ROS); however, its potential synergy with antibiotics has not been thoroughly investigated. Here, we show that sublethal concentrations of AGXX(R) strongly enhance aminoglycoside-mediated killing across a diverse panel of Gram-negative and Gram-positive MDR clinical isolates, including highly aminoglycoside-resistant strains. Combinational treatments significantly reduced the effective concentrations of gentamicin, tobramycin, kanamycin, and amikacin required for bacterial killing. Mechanistic analyses revealed that AGXX(R)/aminoglycoside co-treatment induces pronounced intracellular ROS accumulation, resulting in severe proteotoxic stress, extensive protein aggregation, and DNA damage. Scavenging ROS abolished synergistic killing, establishing oxidative imbalance as the primary driver of the synergy between both antimicrobials. We further identify polyphosphate as a key bacterial defense mechanism that mitigates ROS accumulation, proteotoxicity, and genotoxic stress during combinational treatment. Moreover, AGXX(R)-aminoglycoside synergy was preserved in an artificial urine medium and across clinical UPEC isolates, underscoring its relevance to urinary tract infections. Together, these findings position AGXX(R) as a potent aminoglycoside adjuvant that restores antibiotic efficacy through ROS-driven macromolecular damage, supporting its development for combination therapies against MDR bacterial infections.

microbiology↗

bioRxiv2023

The Novel Silver-Containing Antimicrobial Potentiates Aminoglycoside Activity Against Pseudomonas aeruginosa.

The rapid dissemination of antibiotic resistance combined with the decline in the discovery of novel antibiotics represents a major challenge for infectious disease control that can only be mitigated by investments into novel treatment strategies. Alternative antimicrobials, including silver, have regained interest due to their diverse mechanisms of inhibiting microbial growth. One such example is AGXX(R), a broad-spectrum silver containing antimicrobial that produces highly cytotoxic reactive oxygen species (ROS) to inflict extensive macromolecular damage. Due to connections identified between ROS production and antibiotic lethality, we hypothesized that AGXX(R) could potentially increase the activity of conventional antibiotics. Using the gram-negative pathogen Pseudomonas aeruginosa, we screened possible synergistic effects of AGXX(R) on several antibiotic classes. We found that the combination of AGXX(R) and aminoglycosides tested at sublethal concentrations led to a rapid exponential decrease in bacterial survival and restored sensitivity of a kanamycin-resistant strain. ROS production contributes significantly to the bactericidal effects of AGXX(R)/aminoglycoside treatments, which is dependent on oxygen availability and can be reduced by the addition of ROS scavengers. Additionally, P. aeruginosa strains deficient in ROS detoxifying/repair genes were more susceptible to AGXX(R)/aminoglycoside treatment. We further demonstrate that this synergistic interaction was associated with significant increase in outer and inner membrane permeability, resulting in increased antibiotic influx. Our study also revealed that AGXX(R)/aminoglycoside-mediated killing requires an active proton motive force across the bacterial membrane. Overall, our findings provide an understanding of cellular targets that could be inhibited to increase the activity of conventional antimicrobials. IMPORTANCEThe emergence of drug-resistant bacteria coupled with the decline in antibiotic development highlights the need for novel alternatives. Thus, new strategies aimed at repurposing conventional antibiotics have gained significant interest. The necessity of these interventions is evident especially in gram-negative pathogens as they are particularly difficult to treat due to their outer membrane. This study highlights the effectiveness of the silver containing antimicrobial AGXX(R) in potentiating aminoglycoside activities against P. aeruginosa. The combination of AGXX(R) and aminoglycosides not only reduces bacterial survival rapidly but also significantly re-sensitizes aminoglycoside-resistant P. aeruginosa strains. In combination with gentamicin, AGXX(R) induces increased endogenous oxidative stress, membrane damage and iron sulfur cluster disruption. These findings emphasize AGXX(R)s potential as a route of antibiotic adjuvant development and shed light into potential targets to enhance aminoglycoside activity.

microbiology↗

bioRxiv2020

The Photoconvertible Fluorescent Probe, CaMPARI, Labels Active Neurons in Freely-Moving Intact Adult Fruit Flies

Linking neural circuitry to behavior by mapping active neurons in vivo is a challenge. Both genetically encoded calcium indicators (GECIs) and intermediate early genes (IEGs) have been used to pinpoint active neurons during a stimulus or a behavior but have drawbacks such as limiting the movement of the organism, requiring a priori knowledge of the active region or having poor temporal resolution. CaMPARI (calcium-modulated photoactivatable ratiometric integrator) was engineered to overcome these spatial-temporal challenges. CaMPARI is a photoconvertible protein that only converts from green to red fluorescence in the presence of high calcium concentration and violet (405 nm) light. This allows the experimenter to precisely mark active neurons within defined temporal windows. The photoconversion can then be quantified by taking the ratio of the red fluorescence to the green. CaMPARI promises the ability to trace active neurons during specific stimulus; however, CaMPARIs uses in adult Drosophila have been limited to photoconversion during fly immobilization. Here, we demonstrate a method that allows photoconversion of multiple freely-moving intact adult flies during a stimulus. Flies were placed in a dish with filter paper wet with acetic acid (pH=2) or neutralized acetic acid (pH=7) and exposed to photoconvertible light (60 mW) for 30 min (500 ms on, 200 ms off). Immediately following photoconversion, whole flies were fixed and imaged by confocal microscopy. The red:green ratio was quantified for the DC4 glomerulus, a bundle of neurons expressing Ir64a, an ionotropic receptor that senses acids in the Drosophila antennal lobe. Flies exposed to acetic acid showed 1.3-fold greater photoconversion than flies exposed to neutralized acetic acid. This finding was recapitulated using a more physiological stimulus of apple cider vinegar. These results indicate that CaMPARI can be used to label neurons in intact, freely-moving adult flies and will be useful for identifying the circuitry underlying complex behaviors.

neuroscience↗