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Biology subjects

Easton, E. E.

Publications and source records attributed to Easton, E. E..

4 recordsLinked to original sources

Automated and quantitative characterization of multi-scale benthic habitat and associated biological communities of an unknown southeast Pacific seamount

Seamounts are prominent deep-ocean features that strongly influence geological processes, ocean circulation, and benthic biodiversity. Despite their importance, most seamounts remain unmapped and poorly characterized, particularly in the southeast Pacific Ocean, a region recognized for high marine endemism and ecological isolation. In this study, we present a quantitative habitat characterization of a previously undocumented seamount, informally named Solito Seamount, located between the Nazca-Desventuradas Marine Park and the Juan Fernandez Archipelago. High-resolution multibeam bathymetry and backscatter intensity data were integrated with in situ observations from two remotely operated vehicle (ROV) dives (SO643 and SO645) to investigate how geomorphology and substrate distribution influence benthic community patterns. An automated and hierarchical quantitative mapping framework incorporating objective terrain analysis and multivariate statistical techniques, including principal component analysis and clustering, was applied to delineate five distinct megahabitat types: flat, basal slope, valley, ridge slope, and ridge crest. ROV video transects traversing these megahabitats revealed five associated substrate type forming macrohabitats: bedrock, bedrock with sediment veneer, sediment-rock transition, sediment, and coral rubble. Outputs were used to investigate how environmental heterogeneity structures megafaunal assemblages of Solito Seamount. Multivariate analysis revealed a combined effect of megahabitat type and substrate type on benthic megafaunal assemblages across the depth gradient. These compositional dissimilarities were primarily driven by habitat-forming taxa. In the deeper dive (SO643), a broad suite of taxa contributed to dissimilarities, and assemblages were primarily organised by megahabitat. The ridge crest hosted a distinct reef-building scleractinian community, whereas the ridge slope hosted mixed antipatharian, gorgonian and actiniarian assemblages. In contrast, the shallower dive exhibited simpler patterns with few taxa driving dissimilarities. Substrate effects were most pronounced with coral rubble forming a distinct habitat characterised by sponges (Stelletta sp.). Pronounced biological differences between dives may also represent depth-dependent structuring resulting from differences in oxygen regimes associated with water masses, underscoring the role of oceanographic forcing. This study provides the first quantitative habitat map of this previously undocumented seamount, delivering essential baseline information for this largely unexplored region of the southeast Pacific. The integrated multi-scale geophysical and biological approach presented here offers a robust framework for advancing seamount ecosystem understanding and supporting future biodiversity assessments and conservation planning.

ecology↗

Contrast-enhanced micro-XCT as a tool for organismal and reproductive trait observations in corals based on scans of Thesea nivea Deichmann, 1936

Micro-X-ray computed tomography (micro-XCT) with contrast enhancement is considered a non-destructive tool that is increasingly being applied to explore the internal and external structures of vertebrates and invertebrates. Although micro-XCT has been applied to corals to study skeletal features, contrast enhancement has not been applied to evaluate the utility for visualization of soft tissue structures in corals. This study is the first to evaluate the utility of contrast enhancement to visualize internal and external features, including soft tissue features, of the octocorals. Contrast staining of a Thesea nivea specimen with 2.5% Lugols iodine permitted visualization of soft tissues with sufficient density differences among tissues to distinguish skeletal elements, dermal layers, polyp internal structures, and oocyte stages and features. Thus, contrast-enhanced micro-XCT is a tool that could advance octocoral systematics. Further optimization of this approach could further enhance its utility for systematics and increase its efficiency through development of semi-automated pipelines for morphometric and histological analyses. HighlightsO_LIContrast-enhanced micro-XCT proves useful for octocoral systematics. C_LIO_LIOrganismal and histological information for T. nivea was visualized with contrast. C_LIO_LISufficient density differences were observed to differentiate among soft tissues. C_LI

ecology↗

Skimming genomes for systematics and DNA barcodes of corals

1: Numerous genomic methods developed over the past two decades have enabled the discovery and extraction of orthologous loci to help resolve phylogenetic relationships across various taxa and scales. Genome skimming (or low-coverage whole genome sequencing) remains a low-cost, promising method to not only extract high-copy loci, but also 100s to 1000s of phylogenetically informative single-copy nuclear loci (e.g., ultraconserved elements [UCEs] and exons) from contemporary and historical museum samples. The subphylum Anthozoa, which includes important ecosystem engineers (e.g., stony corals, black corals, anemones and octocorals) in the marine environment, is in critical need of phylogenetic resolution and thus might benefit from a genome-skimming approach. 2: Genome skimming was conducted on 242 hexacorals and octocorals collected from 1890 to 2022. Using previously developed target-capture baitsets, we bioinformatically obtained UCEs and exons from the genome-skimming data and incorporated them with data from previously published target-capture studies. We also extracted partial to whole mitogenomes and nuclear rRNA genes from the skim data. 3: The mean number of UCE and exon loci extracted from the genome skimming data was 1,837 {+/-} 662 SD for octocorals and 1,422 {+/-} 720 loci for hexacorals; phylogenetic relationships were well resolved within each class. A mean of 1,422 {+/-} 720 loci were obtained from the historical museum specimens, with 1,253 loci recovered from the oldest specimen collected in 1886 and 1,336 loci recovered from a holotype. The nuclear rRNA genes and the majority of mitochondrial genes were successfully obtained from >95% of samples. Out of 99 circularized mitogenomes, 88% were recovered in samples from which we obtained >15M paired-end (PE) reads (>30M total reads); there was more variability in whether mitogenomes were circularized or not in samples with <15M PE reads. 4: Bioinformatically pulling UCEs, exons, mitochondrial genomes, and nuclear rRNA genes from genome skimming is a viable and low-cost option for phylogenetic studies. This approach can be used to review and support taxonomic revisions and reconstruct evolutionary histories, including historical museum and type specimens.

evolutionary biology↗

Hybrid conferences: opportunities, challenges and ways forward

Hybrid conferences are in-person events that are also accessible online. This type of meeting format was rare pre-COVID-19 but started to become more common recently given the asynchronous global progression of the pandemic and the uneven access and distribution of vaccines that led to a large proportion of participants being unable to attend international conferences in person. Here we report the organization of a middle-sized (581 participants: 159 onsite, 422 online) international hybrid conference that took place in France in September 2021. We highlight particular organizational challenges inherent to this relatively new type of meeting format. Furthermore, we surveyed both in-person and online participants to better understand their conference experience and to propose improvements based on the feedback received. Finally, we compare the advantages and disadvantages of three types of conferences (onsite-only, online-only and hybrid) and suggest that hybrid events should be favored in the future because they offer the most flexibility to participants. We conclude by proposing suggestions and ways forward to maximize accessibility and inclusivity of hybrid conferences.

scientific communication and education↗