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Duarte, A. I.

Publications and source records attributed to Duarte, A. I..

2 recordsLinked to original sources

Energetic gradients emerge in developing motor-microtubule structures

Living matter produces a variety of beautiful spatiotemporal structures and patterns that are not enduringly present in their nonliving counterparts. These ordered, non-equilibrium steady states are often sustained through the consumption of energy. Here, we investigate the energetic cost of assembling an ordered aster from an initially disordered, uniform mixture of cytoskeletal microtubules and kinesin motors. Using a calibrated fluorescent ATP reporter, we measure reproducible radial ATP gradients on scales of tens of microns that establish within, and persist over, tens of minutes, alongside coupled spatial gradients in motor density. These appreciable gradients are predicted by a reaction-diffusion model that acknowledges the localization of ATP consumption to regions where both molecular motors and microtubules are sufficiently abundant to encourage consumption, as confirmed by finite element modeling. With our results, we compare the power per volume required by our cytoskeletal networks with the known power per volume expenditure in cells. Comparison of our measured results with estimates of the dissipative processes available to motor-microtubule mixtures leads to the hypothesis that maintaining spatial motor gradients dominates the energetic demand in this system. Our direct quantification of energetic fluxes across space unlocks future explorations of what steady states are accessible to cells, and how the cytoskeleton drives broad spatial organization. SignificanceHow much energy do organisms pay to form and maintain their organizing biochemical patterns? Existing measurements of cellular metabolism and energy expenditures largely resolve net or supply-side biochemical fluxes, without spatial information, impeding the study of this basic question. Here, we develop an experimental approach to directly measure the distributions of biochemical energy that respond to power expenditures of cytoskeletal motor-microtubule networks as they form aster structures, reminiscent of those found in the mitotic spindle. As these structures self-assemble, calibrated readouts in real molecular units register large, reproducible, and long-lived gradients of ATP. We interpret these measurements by developing theory to account for the functional destinies of energy expenditure. These advances clarify outstanding questions of energy in living matter.

biophysics↗

Motor-driven microtubule diffusion in a photobleached dynamical coordinate system

Motor-driven cytoskeletal remodeling in cellular systems can often be accompanied by a diffusive-like effect at local scales, but distinguishing the contributions of the ordering process, such as active contraction of a network, from this active diffusion is difficult to achieve. Using light-dimerizable kinesin motors to spatially control the formation and contraction of a microtubule network, we deliberately photobleach a grid pattern onto the filament network serving as a transient and dynamic coordinate system to observe the deformation and translation of the remaining fluorescent squares of microtubules. We find that the network contracts at a rate set by motor speed but is accompanied by a diffusive-like spread throughout the bulk of the contracting network with effective diffusion constant two orders of magnitude lower than that for a freely-diffusing microtubule. We further find that on micron scales, the diffusive timescale is only a factor of {approx} 3 slower than that of advection regardless of conditions, showing that the global contraction and long-time relaxation from this diffusive behavior are both motor-driven but exhibit local competition within the network bulk. O_TEXTBOXSignificance StatementCytoskeletal reorganization can come at the cost of local diffusive-like disordering effects from the same active elements, but distinguishing these processes can be challenging. By photobleaching an actively contracting microtubule network, we show that the bulk redistribution of filaments exhibit a diffusion-like reorganization that can be tuned by the effective motor speed. By tuning these parameters, we show a conserved relationship between active contraction rates and effective diffusion constants, suggesting that while advection of the cytoskeletal network dominates over scales of tens to hundreds of microns, motors additionally induce a diffusive-like effect that begins to compete with advection at micron scales. C_TEXTBOX

biophysics↗