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Duan, E. S.

Publications and source records attributed to Duan, E. S..

2 recordsLinked to original sources

Horizontal gene transfer by plasmids relaxes the evolutionary constraints of its own tradeoff

Horizontal gene transfer (HGT) is a defining feature of plasmid biology, enabling plasmids to spread between bacterial cells and driving the global dissemination of antibiotic resistance and other adaptive traits. HGT and vertical gene transfer (VGT) have long been assumed to be subject to an evolutionary tradeoff, where improvements in one come at the expense of the other. Yet whether this tradeoff reliably constrains plasmid evolution remains unclear. Through the first cross-literature synthesis examining both transmission traits across 16 studies and 245 plasmid-host pairs, we find mixed empirical evidence: patterns consistent with a tradeoff alongside outcomes that a strict tradeoff should make impossible. We propose that this contradiction is resolved by recognizing that a tradeoff is ensured only when plasmid-host pairs are well-adapted to one another. Because HGT introduces plasmids into novel hosts where this adaptation is disrupted, it systematically creates the very conditions under which near-term evolution need not be bound by a tradeoff. We support this framework empirically by documenting the first mutation that simultaneously improves both transmission modes, arising from a non-coevolved plasmid-host pair. These findings reveal a fundamental irony: the defining feature of plasmid transmission is the very mechanism that relaxes the evolutionary constraints of its own tradeoff.

evolutionary biology↗

Molecular pet or parasite? Exploring selection for vertical and horizontal plasmid transfer

Understanding the environmental conditions that drive selection for increased horizontal plasmid transfer is crucial for predicting the spread of plasmid-encoded antibiotic resistance. In natural systems, plasmids exhibit diverse lifestyles, ranging from "host-centric" strategies, which favor vertical gene transfer (VGT) from mother to daughter cell at the expense of horizontal mobility, to "parasitic" strategies, which favor horizontal gene transfer (HGT) by conjugation at the expense of host fitness. However, laboratory evolution experiments are biased towards host-centric evolution, highlighting a gap in our ability to consistently select for horizontal mobility. To understand this experimental bias, we developed a mathematical model to explore the invasion of pleiotropic transfer mutations. Using local linear stability analysis, we derived an invasion criterion establishing that, for a given pleiotropic cost, the availability of plasmid-free cells determines whether increased transfer is selected. We expanded this model to better represent our previous evolution experiment, in which selection for a host-centric mutant occurred despite the addition of plasmid-free cells and periodic selection for transconjugants. We found that standard batch culture protocols inherently impose strong selective pressure on VGT, heavily limiting the laboratory observation of increases in HGT. We experimentally and theoretically demonstrated that a simple protocol modification--minimizing excess growth by eliminating batch culture passages--effectively tips selection towards HGT. Finally, we performed a parameter sweep to predict the invasion success of hypothetical mutants across HGT-VGT phenotypic space. Our predictive framework can be used to further explore the evolution of plasmid transfer under conditions more representative of natural environments where medically and environmentally relevant plasmids evolve.

microbiology↗