Biology subjects

Doyon, J.

Publications and source records attributed to Doyon, J..

At least 19 recordsLinked to original sources

bioRxiv2026

Thalamocortical orchestration of human theory of mind

Reasoning about others thoughts or beliefs is central to human social behavior. This ability, known as theory of mind (ToM), has been primarily attributed to cortical regions of the default network (DN). However, whether and how subcortical structures, particularly the thalamus, contribute to this high-level computation remains unknown. Here, we investigated human thalamocortical dynamics during a naturalistic ToM movie watching condition, taking a rare dual-modality approach by combining high-field 7T fMRI and intracranial stereoelectroencephalography (sEEG). Across both modalities, ToM events reliably activated the DN, whereas the thalamus lacked canonical local activation. Despite this absence of local activation, the thalamus shared ToM-related representational structure and exhibited enhanced bidirectional interactions with the DN during mentalizing across methods. Crucially, sEEG revealed that the thalamus coordinated DN activity via cross-frequency phase-amplitude coupling (PAC), whereby thalamic low-frequency phase unidirectionally modulated DN high-frequency activity. Furthermore, the strength of thalamic-DN PAC predicted both the activity magnitude and the representational quality of ToM-related information within the dorsomedial DN subsystem. Together, these findings identify the human thalamus as a regulatory hub that gates DN computations during ToM without exhibiting observable localized activity, revealing a previously unrecognized mechanism by which thalamic dynamics coordinate high-level social cognition in humans.

neuroscience↗

bioRxiv2026

Sleep Spindle-Locked Targeted Memory Reactivation Enhances Declarative Memory Consolidation

Study ObjectivesSleep spindles are implicated in memory consolidation. Yet direct evidence linking spindle dynamics to declarative memory outcomes remains limited. We thus tested whether targeted memory reactivation (TMR) time-locked to sleep spindles enhances declarative memory, and whether the temporal organization of stimulated spindles-trains versus isolated events-is selectively associated with distinct memory outcomes. MethodsTwenty-eight healthy young adults learned image locations from two categories (animals, clothing) in a grid, each paired with a distinct auditory cue. During overnight NREM sleep, one cue was replayed time-locked to spindles detected in real-time using a closed-loop system (TMR condition); the other served as the non-reactivated control (No-TMR condition). Category-cue assignment was counterbalanced. Post-sleep recall, recognition accuracy, and movement time were assessed. ResultsRecall accuracy was significantly higher in the TMR than the No-TMR condition (93.96% vs. 90.61%, p = .024), whereas recognition accuracy (p = .139) and movement time (p = .651) did not differ. Stimulation intensity within spindle trains correlated with the TMR effect on recall (Spearman {rho} = .531, p = .004), whereas the proportion of isolated spindle stimulations correlated with the TMR effect on recognition ({rho} = .563, p = .002). Cross-associations were not significant. ConclusionsSpindle-locked TMR enhances recall-based declarative memory retention. The selective association between spindle temporal clustering and memory outcomes suggests that train-embedded and isolated spindles support different aspects of memory consolidation, highlighting spindle temporal context as a functionally relevant dimension of sleep-dependent memory processing.

neuroscience↗

bioRxiv2026

Rearing Istocheta aldrichi (Diptera: Tachinidae) from field-collected Japanese beetles (Popillia japonica): 1. Methods to improve insect collection and parasitoid pupariation

Istocheta aldrichi (Diptera: Tachinidae), a specialist parasitoid of the invasive Japanese beetle, Popillia japonica (Coleoptera: Scarabaeidae), was released to eastern North America in the 1920s as part of a classical biological control program. Further releases are being considered in different regions of North America and Europe where P. japonica is establishing. Successful releases of the biocontrol agent depend on identifying efficient techniques for collecting parasitized hosts from the field and rearing the parasitoid through diapause to obtain I. aldrichi adults. In this study, we evaluated how the collection date, the collection method (hand-picking vs. regular traps vs. modified traps) and rearing conditions (food provision and substrate type) of parasitized hosts influence I. aldrichi pupariation and emergence. The proportion of parasitized beetles yielding I. aldrichi puparia decreased considerably as the season progressed. Rearing conditions immediately after collection influenced both puparium yield and quality: withholding food from parasitized P. japonica slightly increased puparium yield but reduced puparium weight, while the effect of food provision on subsequent overwintering survival depended on rearing substrate. Finally, simple modifications to commercial traps (larger, ventilated, containers with added food source and substrate) collected more beetles than regular traps and promoted successful development of the parasitoid to the puparium stage. Our results are used to suggest basic guidelines for collecting and rearing I. aldrichi in experimental research and applied biological control of P. japonica.

ecology↗

bioRxiv2026

Rearing Istocheta aldrichi (Diptera: Tachinidae) from field-collected Japanese beetle (Popillia japonica): methods to improve overwintering, adult emergence and longevity

Istocheta aldrichi (Diptera: Tachinidae) is a specialist parasitoid of the invasive Japanese beetle, Popillia japonica (Coleoptera: Scarabaeidae). Research and releases for biological control depend on field collecting parasitized hosts and rearing the parasitoid through diapause to obtain I. aldrichi adults. This study investigated how rearing practices before, during and after the seasonal overwintering period affected the proportion of I. aldrichi pupae that emerged as adults, the timing of parasitoid emergence, and their longevity. Increasing cold exposure duration during overwintering increased adult I. aldrichi emergence from puparia and reduced development time after transfer to warm conditions. Adult I. aldrichi emergence from overwintered puparia depended on interactions between overwintering environment (indoors vs. outdoors), spring thermal regime, and the timing of host collection in the previous season. Burying puparia in the soil in late summer/early fall resulted in higher subsequent adult I. aldrichi emergence. Manipulating spring temperatures in controlled environments allowed parasitoid emergence to be staggered over several weeks without reducing emergence success. Emergence under outdoor spring conditions was unreliable. Adult longevity was affected by temperature and diet: cooler conditions extended lifespan, honey-water increased longevity relative to pollen alone or honey-water and pollen together. These results provide a foundation to further improve I. aldrichi rearing techniques for use in experimental research and applied biological control of P. japonica.

ecology↗

bioRxiv2025

Slow Spindle Trains During Daytime Naps are Associated with Improved Declarative Memory Consolidation

Memory consolidation refers to the process by which newly encoded memories are strengthened and retained over time, and ample evidence indicates that sleep supports this process for both procedural and declarative memories. Although sleep spindles during non-rapid eye movement (NREM) sleep have been associated to consolidation, it remains unclear whether all spindle types contribute equally. Spindles vary in frequency and topography-slow spindles ([≤]12.5Hz) predominating over frontal regions, whereas fast spindles (>12.5Hz) peak parietally - and recent work suggests that procedural memory consolidation during overnight sleep is related to the temporal organization of spindles in trains (i.e., events occurring <6s apart). Here we investigated whether a similar mechanism operates for declarative memory during daytime naps. Participants were assigned to a Nap (N=23) or No-Nap (N=15) group, and completed an object-spatial location task involving 36 item-location associations. Memory was assessed immediately after learning and again following a 90-minute nap or an equivalent wake period. Results showed that the Nap group exhibited significantly better delayed memory, as measured by combined recall-recognition score, and a greater proportion of participants maintained or improved their performance. In the Nap group, memory performance correlated with local spindle density at frontal and parietal sites, and, critically, with the proportion of slow spindles clustered in trains during NREM2. These findings suggest the temporal organization of slow spindles into clusters support declarative memory consolidation, pointing to a shared spindle-based mechanism across domains.

neuroscience↗

bioRxiv2025

Spinal cord structural and functional architecture and its shared organization with the brain across the adult lifespan

The spinal cord connects the brain to peripheral systems. Yet its integration with cerebral networks remains a key neuroscience question. Capturing structural and functional central nervous system (CNS) changes throughout the lifespan is essential for characterizing healthy and pathological aging. Leveraging a unique multimodal dataset combining spinal and cerebrospinal imaging, we jointly mapped the spinal cord structural and functional architecture across adulthood. Our results revealed age-related changes across these modalities and identified organizational principles shared with the brain. These changes were most pronounced in the somatosensory pathway, with microstructural decline coupled to shifts in functional connectivity and local spontaneous activity as aging progresses. Extending analyses to the brain uncovered convergent CNS-wide aging mechanisms, including gray matter loss, functional dedifferentiation, and increased spontaneous activity, highlighting shared neural aging trajectories. Together, our findings provide a systems-level view of alterations with age and lay the groundwork for early biomarkers of sensorimotor decline.

neuroscience↗

bioRxiv2025

Spine-Prints: Transposing Brain Fingerprints to the Spinal Cord

Functional connectivity (FC) patterns in the human brain form a reproducible, individual-specific "fingerprint" that allows reliable identification of the same participant across scans acquired over different sessions. While brain fingerprinting is robust across healthy individuals and neuroimaging modalities, little is known about whether the fingerprinting principle extends beyond the brain. Here, we used multiple functional magnetic resonance imaging (fMRI) datasets acquired at different sites to examine whether a fingerprint can be revealed from FCs of the cervical region of the human spinal cord. Our results demonstrate that the functional organisation of this region also exhibits individual-specific properties, suggesting the potential existence of a spine-print within the same acquisition session. Although the spine-print scores are not directly comparable to those observed in the brain, this discrepancy may in part reflect the intrinsic limitations of imaging this region with fMRI, where where the signals are more susceptible to noise and effective resolution relative to structure size, and tSNR are markedly lower than in the brain.This study provides the first evidence of a spinal cord connectivity fingerprint, underscoring the importance of considering a more comprehensive view of the entire central nervous system. Eventually, these spine-specific signatures could contribute to identifying individualized biomarkers of neuronal connectivity, with potential clinical applications in neurology and neurosurgery.

neuroscience↗

bioRxiv2024

Impaired online and enhanced offline motor sequence learning in individuals with Parkinson's disease

Whereas memory consolidation research has traditionally focused on longer temporal windows (i.e., hours to days) following an initial learning episode, recent research has also examined the functional significance of the shorter rest epochs commonly interspersed with blocks of task practice (i.e., "micro-offline" intervals on the timescale of seconds to minutes). In the motor sequence learning domain, evidence from young, healthy individuals suggests that micro-offline epochs afford a rapid consolidation process that is supported by the hippocampus. Consistent with these findings, amnesic patients with hippocampal damage were recently found to exhibit degraded micro-offline performance improvements. Interestingly, these offline losses were compensated for by larger performance gains during online practice. Given the known role of the striatum in online motor sequence learning, we hypothesized that individuals with dysfunction of the striatal system would exhibit impaired online, yet enhanced micro-offline, learning (i.e., a pattern of results opposite to those observed in patients with hippocampal lesions). We tested this hypothesis using Parkinsons disease (PD) as a model of striatal dysfunction. Forty-two drug-naive individuals (men and women) with a clinical diagnosis of unilateral PD and 30 healthy control subjects completed a motor sequence learning paradigm. Individuals with PD exhibited deficits during online task practice that were paralleled by greater improvements over micro-offline intervals. This pattern of results could not be explained by disease-related deficits in movement execution. These data suggest that striatal dysfunction disrupts online learning, yet total learning remains unchanged because of greater micro-offline performance improvements that potentially reflect hippocampal-mediated compensatory processes. Significance StatementThe short rest intervals commonly interspersed between periods of active task engagement have traditionally been employed to minimize the build-up of fatigue. There is recent evidence, however, suggesting that these rest epochs may play an active role in motor learning and memory processes and the hippocampus appears to be a critical brain region supporting this rapid "offline" learning. Here, we show that individuals with Parkinsons disease, a movement disorder characterized by dysfunction in the basal ganglia including the striatum, exhibit deficits during active task practice but greater learning over the interspersed offline intervals. Results potentially suggest that the relatively intact hippocampus may help compensate for motor sequence learning deficits linked to a disrupted striatal system in Parkinsons disease.

neuroscience↗

bioRxiv2024

Body size interacts with the structure of the central nervous system: A multi-center in vivo neuroimaging study

Clinical research emphasizes the implementation of rigorous and reproducible study designs that rely on between-group matching or controlling for sources of biological variation such as subjects sex and age. However, corrections for body size (i.e. height and weight) are mostly lacking in clinical neuroimaging designs. This study investigates the importance of body size parameters in their relationship with spinal cord (SC) and brain magnetic resonance imaging (MRI) metrics. Data were derived from a cosmopolitan population of 267 healthy human adults (age 30.1{+/-}6.6 years old, 125 females). We show that body height correlated strongly or moderately with brain gray matter (GM) volume, cortical GM volume, total cerebellar volume, brainstem volume, and cross-sectional area (CSA) of cervical SC white matter (CSA-WM; 0.44[≤]r[≤]0.62). In comparison, age correlated weakly with cortical GM volume, precentral GM volume, and cortical thickness (-0.21[≥]r[≥]-0.27). Body weight correlated weakly with magnetization transfer ratio in the SC WM, dorsal columns, and lateral corticospinal tracts (-0.20[≥]r[≥]-0.23). Body weight further correlated weakly with the mean diffusivity derived from diffusion tensor imaging (DTI) in SC WM (r=-0.20) and dorsal columns (-0.21), but only in males. CSA-WM correlated strongly or moderately with brain volumes (0.39[≤]r[≤]0.64), and weakly with precentral gyrus thickness and DTI-based fractional anisotropy in SC dorsal columns and SC lateral corticospinal tracts (-0.22[≥]r[≥]-0.25). Linear mixture of sex and age explained 26{+/-}10% of data variance in brain volumetry and SC CSA. The amount of explained variance increased at 33{+/-}11% when body height was added into the mixture model. Age itself explained only 2{+/-}2% of such variance. In conclusion, body size is a significant biological variable. Along with sex and age, body size should therefore be included as a mandatory variable in the design of clinical neuroimaging studies examining SC and brain structure.

neuroscience↗

bioRxiv2024

Cerebro-spinal somatotopic organization uncoveredthrough functional connectivity mapping

Somatotopy, the topographical arrangement of sensorimotor pathways corresponding to distinct body parts, is a fundamental feature of the human central nervous system (CNS). Traditionally, investigations into brain and spinal cord somatotopy have been conducted independently, primarily utilizing body stimulations or movements. To date, however, no study has probed the somatotopic arrangement of cerebro-spinal functional connections in vivo in humans. In this study, we used simultaneous brain and cervical spinal cord functional magnetic resonance imaging (fMRI) to demonstrate how the coordinated activities of these two CNS levels at rest can reveal their shared somatotopy. Using functional connectivity analyses, we mapped preferential correlation patterns between each spinal cord segment and distinct brain regions, revealing a somatotopic gradient within the cortical sensorimotor network. We then validated this large-scale somatotopic organization through a complementary data-driven analysis, where we effectively identified spinal cord segments through the connectivity profiles of their voxels with the sensorimotor cortex. These findings underscore the potential of resting-state cerebro-spinal cord fMRI to probe the large-scale organization of the human sensorimotor system with minimal experimental burden, holding promise for gaining a more comprehensive understanding of normal and impaired somatosensory-motor functions.

neuroscience↗

bioRxiv2024

Neurophysiological Correlates of Phase-Specific Enhancement of Motor Memory Consolidation via Slow-Wave Closed-Loop Targeted Memory Reactivation

Memory consolidation can be enhanced during sleep using targeted memory reactivation (TMR) and closed-loop (CL) acoustic stimulation on the up-phase of slow oscillations (SOs). Here, we tested whether applying TMR at specific phases of the SOs (up vs. down vs. no reactivation) could influence the behavioral and neural correlates of motor memory consolidation in healthy young adults. Results showed that up- (as compared to down-) state cueing resulted in greater performance improvement. Sleep electrophysiological data indicated that up-stimulated SOs exhibited higher amplitude and greater peak-nested sigma power. Task-related functional magnetic resonance images revealed that up-state cueing strengthened activity in - and segregation of - striato-motor and hippocampal networks; and that these modulations were related to the beneficial effect of TMR on sleep features and performance. Overall, these findings highlight the potential of CL-TMR to induce phase-specific modulations of motor performance, sleep oscillations and brain responses during motor memory consolidation.

neuroscience↗

bioRxiv2023

Sleep spindle density and temporal clustering are associated with sleep-dependent memory consolidation in Parkinson's disease

Sleep is required for successful memory consolidation. Sleep spindles, bursts of oscillatory activity occurring during non-REM sleep, are known to be crucial for this process and, recently, it has been proposed that the temporal organization of spindles into clusters might additionally play a role in memory consolidation. In Parkinsons disease, spindle activity is reduced, and this reduction has been found to be predictive of cognitive decline. However, it remains unknown whether alterations in sleep spindles in Parkinsons disease are predictive of sleep-dependent cognitive processes like memory consolidation, leaving open questions about the possible mechanisms linking sleep and more general cognitive state in Parkinsons patients. The current study sought to fill this gap by recording overnight polysomnography and measuring overnight declarative memory consolidation in a sample of thirty-five Parkinsons patients. Memory consolidation was measured using a verbal paired-associates task administered before and after the night of recorded sleep. We found that lower sleep spindle density at frontal leads during non-REM stage 3 was associated with worse overnight declarative memory consolidation. We also found that patients who showed less temporal clustering of spindles exhibited worse declarative memory consolidation. These results suggest alterations to sleep spindles, which are known to be a consequence of Parkinsons disease, might represent a mechanism by which poor sleep leads to worse cognitive function in Parkinsons patients. Statement of significanceSleep -- particularly spindle activity -- is critical for memory consolidation, a core cognitive process. Changes to the architecture and oscillations of sleep are well documented in Parkinsons disease (PD) and have been associated with worse overall cognition. However, whether altered sleep plays a causal role in this relationship, by directly interfering with sleep-dependent cognitive processes, or whether it represents a mere epiphenomenon of advancing disease, remains unknown. Our study is the first to investigate a possible direct relationship between sleep and cognition in PD. We show that sleep spindles and their temporal clustering into trains relate to impairments in overnight declarative memory consolidation in patients. These findings are an important first step towards identifying modifiable sources of cognitive impairment in PD.

neuroscience↗

bioRxiv2022

Clustering and temporal organization of sleep spindles underlie motor memory consolidation

Sleep benefits motor memory consolidation, which is mediated by sleep spindle activity and associated memory reactivations during non-rapid eye movement (NREM) sleep. However, the particular role of NREM2 and NREM3 sleep spindles and the mechanisms triggering this memory consolidation process remain controversial. Here, simultaneous electroencephalographic and functional magnetic resonance imaging (EEG-fMRI) recordings were collected during night-time sleep following the learning of a motor sequence task. Adopting a time-based clustering approach, we provide evidence that spindles iteratively occur within clustered and temporally organized patterns during both NREM2 and NREM3 sleep. However, the clustering of spindles in trains is related to motor memory consolidation during NREM2 sleep only. Altogether, our findings suggest that spindles clustering and rhythmic occurrence during NREM2 sleep may serve as an intrinsic rhythmic sleep mechanism for the timed reactivation and subsequent consolidation of motor memories, through synchronized oscillatory activity within a subcortical-cortical network involved during learning.

neuroscience↗

bioRxiv2022

Electrophysiological signatures of targeted memory reactivation during sleep are not accompanied by motor performance improvements in older adults

Targeted memory reactivation (TMR) during sleep enhances memory consolidation in young adults by modulating electrophysiological markers of neuroplasticity. Interestingly, older adults exhibit deficits in motor memory consolidation, an impairment that has been linked to age-related degradations in the same sleep features sensitive to TMR. We hypothesized that TMR would enhance consolidation in older adults via the modulation of these markers. Seventeen older participants were trained on a motor task involving two auditory-cued sequences. During a post-learning nap, two auditory cues were played: one associated to a learned (i.e., reactivated) sequence and one control. Performance during two delayed retests did not differ between reactivated and non-reactivated sequences. Moreover, both associated and control sounds modulated brain responses, yet there were no consistent differences between the auditory cue types. Our results collectively demonstrate that older adults do not benefit from specific reactivation of a motor memory trace by an associated auditory cue during post-learning sleep. It is possible, however, that auditory stimulation during post-learning sleep boosts motor memory consolidation in a non-specific manner.

neuroscience↗

bioRxiv2022

DeepRetroMoCo: Deep neural network-based Retrospective Motion Correction Algorithm for Spinal Cord functional MRI

There are unique challenges in the preprocessing of spinal cord fMRI data, particularly voluntary or involuntary movement artifacts during image acquisition. Despite advances in data processing techniques for movement detection and correction, there are challenges in extrapolating motion correction algorithm developments in the brain cortex to the brainstem and spinal cord. We trained a Deep Learning-based convolutional neural network (CNN) via an unsupervised learning algorithm, called DeepRetroMoCo, to detect and correct motions in axial T2*-weighted spinal cord data. Spinal cord fMRI data from 27 participants were used for training of the network (135 runs for training and 81 runs for testing). We used average temporal signal-to-noise-ratio (tSNR) and Delta Variation Signal (DVARS) of raw and motion-corrected images to compare the outcome of DeepRetroMoco with sct_fmri_moco implemented in the spinal cord toolbox. The average tSNR in the cervical cord was significantly higher when DeepRetroMoco was used for motion correction compared to sct_fmri_moco method. Average DVARS was lower in images corrected by DeepRetroMoco than those corrected by sct_fmri_moco. The average processing time for DeepRetroMoco was also significantly shorter than sct_fmri_moco. Our results suggest that DeepRetroMoCo improves motion correction procedures in fMRI data acquired from the cervical spinal cord.

neuroscience↗

bioRxiv2022

The length of the thalamo-cortical white matter fibers brings insight into sex differences in sleep spindle frequency

Sleep spindles (SS) are crucial to brain functions like memory and learning. SS characteristics result from the propagation of nerve impulses along white matter (WM) projections underlying an intricate loop between the thalamus and the cortex. SS amplitude and density have been associated with WM diffusion microarchitecture but physiological mechanisms underlying individual and sex-related variations in SS frequency are unknown. Here, we tested a model of traveling signals along the thalamo-cortico-thalamic projections to explain individual differences in spindle frequency. We predicted the presence of a relationship between the length of the thalamo-cortical WM bundles and a specific characteristic of this functional network, SS frequency. Thirty young participants underwent a polysomnographic recording and a 3T MRI including a diffusion sequence. The length of WM fiber bundles between the thalamus and the frontal cortex was derived from probabilistic tractography computed through constrained spherical deconvolution. Longer WM fiber bundles between the thalamus and specific regions of the frontal cortex (rostral middle frontal gyrus and anterior and middle part of the superior frontal gyrus) were associated with slower SS frequency. Moreover, the length of these WM fiber bundles statistically mediated the sex-related differences in SS frequency. By providing a neuroanatomical marker of individual and sex-related differences in SS frequency, this study is the first to highlight the association between the anatomy of a specific brain network and a specific functional characteristic of this network, the frequency of oscillations produced during sleep.

neuroscience↗

bioRxiv2021

Sigma Oscillations Protect or Reinstate Motor Memory Depending on their Temporal Coordination with Slow Waves

Targeted memory reactivation (TMR) during post-learning sleep is known to enhance motor memory consolidation but the underlying neurophysiological processes remain unclear. Here, we confirm the beneficial effect of auditory TMR on motor performance. At the neural level, TMR enhanced slow wave (SW) characteristics. Additionally, greater TMR-related phase-amplitude coupling between slow (0.5-2 Hz) and sigma (12-16 Hz) oscillations after the SW peak was related to higher TMR effect on performance. Importantly, sounds that were not associated to learning strengthened SW-sigma coupling at the SW trough and the increase in sigma power nested in the trough of the potential evoked by these unassociated sounds was related to the TMR benefit. Altogether, our data suggest that, depending on their precise temporal coordination during post learning sleep, slow and sigma oscillations play a crucial role in either memory reinstatement or protection against irrelevant information; two processes that critically contribute to motor memory consolidation.

neuroscience↗

bioRxiv2021

Persistence of Hippocampal and Striatal Multivoxel Patterns during Awake Rest after Motor Sequence Learning

Memory consolidation, the process by which newly encoded and fragile memories become more robust, is thought to be supported by the reactivation of brain regions - including the hippocampus - during post-learning rest. While hippocampal reactivations have been demonstrated in humans in the declarative memory domain, it remains unknown whether such a process takes place after motor learning. Using multivariate analyses of task-related and resting state fMRI data, here we show that patterns of brain activity within both the hippocampus and striatum elicited during motor learning persist into post-learning rest, indicative of reactivation of learning-related neural activity patterns. Moreover, results indicate that hippocampal reactivation reflects the spatial representation of the learned motor sequence. These results thus provide insights into the functional significance of neural reactivation after motor sequence learning.

neuroscience↗