Biology subjects

Domingues, P.

Publications and source records attributed to Domingues, P..

4 recordsLinked to original sources

bioRxiv2025

Preservation and remodelling of chloroplast lipids in photosynthetic sea slug host cells

The capacity to retain long-term functional algal chloroplasts within animal cells is a singular trait of some Sacoglossa sea slugs. The stolen chloroplasts (kleptoplasts) confer photosynthetic capacity to the host. This study investigated how chloroplast lipidomes from two macroalgae (Acetabularia acetabulum and Bryopsis sp.) are modified after sequestration by the photosynthetic sea slugs Elysia crispata, Elysia viridis, and Elysia timida. Pigments were analysed by HPLC, and lipidomic profiling of chloroplasts (glycolipids, betaine lipids, phytosterols) was conducted using C18-LC-MS/MS. Kleptoplasts retain intact algal pigment profile. Glycolipid signatures in sea slug tissues closely resembled those of their algal donors, although shifts in relative abundances suggest remodelling of plastidial membranes, potentially affecting kleptoplast morphology, particularly membrane curvature and stability. In contrast, betaine lipid composition differed markedly between sea slugs and algal donors, with major betaine species common to all sea slugs. Phytosterol composition was better preserved in sea slugs feeding on Bryopsis sp. than on A. acetabulum. This study demonstrated that kleptoplast lipidomes maintain a strong algal identity but undergo selective modifications within the animal host. This remodelling likely optimizes membrane architecture to support long-term stability and photosynthetic functionality within the hosts cellular environment, facilitating the integration and performance of sea slug kleptoplasts. HighlightThe lipid profiles of photosynthetic sea slugs resemble the algal donors chloroplasts. However, alterations in glycolipid composition suggest that the molecular architecture of kleptoplasts is modulated by the host cells.

biochemistry↗

bioRxiv2024

Metabolic and age-associated epigenetic barriers during direct reprogramming of mouse fibroblasts into induced cardiomyocytes

Heart disease is the leading cause of mortality in developed countries novel regenerative procedures are warranted for improving patients well fare. Direct cardiac conversion (DCC) can create induced cardiomyocytes (iCMs) and besides holding great promise, lacks clinical effectiveness for cardiac regeneration as metabolic and age-associated barriers remains elusive. Here, we identify by histone post-translational analysis that DCC triggers major age-dependent alterations in the epigenetic landscape. Metabolomics revealed decrease abundance of anabolic metabolites related to TCA cycle and glutaminolysis and profound mitochondrial network remodeling, with increased elongation and interconnectivity and reliance in mitochondrial respiration in iCMs. Importantly, adult-derived iCMs present increase accumulation of oxidative stress in the mitochondria and pharmacological activation of mitophagy increase DCC of adult fibroblasts in vitro. Metabolic modulation in vitro and dietary manipulations in vivo improves DCC efficiency and are accompanied by significant alterations in the histone acetylation and methylation landscape and mitochondria homeostasis. Our study provides evidence that metaboloepigenetics as a direct role in cell fate transitions driving direct cardiac conversion into iCMs, highlighting the potential use of metabolic modulation in increasing cardiac regenerative strategies.

cell biology↗

bioRxiv2023

A proteogenomic pipeline for the analysis of protein biosynthesis errors in the human pathogen Candida albicans.

Candida albicans is a diploid pathogen known for its ability to live as a commensal fungus in healthy individuals, but causing both superficial infections and disseminated candidiasis in immunocompromised patients where it is associated with high morbidity and mortality. Its success in colonizing the human host is attributed to a wide range of virulence traits that modulate interactions between the host and the pathogen, such as optimal growth rate at 37{degrees}C, the ability to switch between yeast and hyphal forms and a remarkable genomic and phenotypic plasticity. A fascinating aspect of its biology is a prominent heterogeneous proteome that arises from frequent genomic rearrangements, high allelic variation, and high levels of amino acid misincorporations in proteins. The latter leads to increased morphological and physiological phenotypic diversity of high adaptive potential, but the scope of such protein mistranslation is poorly understood due to technical difficulties in detecting and quantifying amino acid misincorporation events in complex proteomic samples. To address this question, we have developed and optimized mass spectrometry and bioinformatics pipelines capable of identifying low-level amino acid misincorporation events at the proteome level. We have also analysed the proteomic profile of an engineered C. albicans strain that exhibits high level of leucine misincorporation at protein CUG sites and employed an in vivo quantitative gain-of-function fluorescence reporter system to validate our MS/MS data. The data show that C. albicans misincorporates amino acids above the background level at protein sites of diverse codons, particularly at CUG sites, confirming our previous data on the quantification of leucine incorporation at single CUG sites of recombinant reporter proteins. The study also demonstrates that increasing misincorporation of Leucine at CUG sites does not alter the translational fidelity of the other codons. These findings advance existing knowledge on amino acid misincorporations in C. albicans and add a new dimension to the remarkable capacity of this fungus to diversify its proteome.

microbiology↗

bioRxiv2019

Noroviruses subvert the core stress granule component G3BP1 to promote viral VPg-dependent translation.

Knowledge of the host factors required for norovirus replication has been hindered by the challenges associated with culturing human noroviruses. We have combined proteomic analysis of the viral translation and replication complexes with a CRISPR screen, to identify host factors required for norovirus infection. The core stress granule component G3BP1 was identified as a host factor essential for efficient human and murine norovirus infection, demonstrating a conserved function across the Norovirus genus. Furthermore, we show that G3BP1 functions in the novel paradigm of viral VPg-dependent translation initiation, contributing to the assembly of translation complexes on the VPg-linked viral positive sense RNA genome by facilitating 40S recruitment. Our data suggest that G3BP1 functions by providing viral RNA a competitive advantage over capped cellular RNAs, uncovering a novel function for G3BP1 in the life cycle of positive sense RNA viruses and identifying the first host factor with pan-norovirus pro-viral activity.

microbiology↗