Biology subjects

Dinet, C.

Publications and source records attributed to Dinet, C..

5 recordsLinked to original sources

bioRxiv2026

Intrafilament nucleotide exchange in a prokaryotic actin homolog

Polymerization and disassembly govern the cellular functions of cytoskeletal proteins. Canonical nucleotide-dependent polymers, including actin and microtubules, renew their nucleotide state through subunit subunit dissociation, nucleotide exchange in solution and repolymerization. Yet the assembly dynamics of the membrane-bound bacterial actin MreB remain unresolved. Here, using total internal reflection fluorescence microscopy and high-speed atomic force microscopy, we visualise Bacillus subtilis MreB assembly on supported lipid bilayers in real time. ATP binding drives polymerization into symmetrically elongating filaments, whereas ATP hydrolysis within filaments promotes disassembly. Unexpectedly, nucleotides continuously exchange within membrane-bound filaments without detectable subunit turnover, coupling filament stability to the surrounding nucleotide pool: ATP exchange stabilizes filaments, whereas ADP exchange triggers rapid fragmentation and disassembly. Monte-Carlo modelling and single-cell in vivo imaging support this mechanism. Thus, intrafilament nucleotide exchange enables MreB filaments to renew their nucleotide state without polymer turnover, revealing nucleotide-state rejuvenation as a new mode of biological polymer regulation.

microbiology↗

bioRxiv2026

ATP-driven membrane binding and polymerization of bacterial actin MreB promotes local membrane fluidization

The bacterial actin homologue MreB plays a key role in rod cell shape determination. We recently showed that MreB from the Gram-positive bacterium Geobacillus stearothermophilus (MreBGs) polymerizes into straight pairs of protofilaments in the presence of both ATP and a lipid surface. Membrane interaction is thought to be mediated by electrostatic interactions with anionic lipids, with final anchoring relying on two spatially close hydrophobic motifs that protrude from the MreBGs monomers, forming a putative membrane-insertion domain. Here, we determined the binding properties of ATP and ADP to MreBGs using fluorescence anisotropy, and monitored ATP-mediated binding and polymer formation on lipid bilayers using liposome binding assays and AFM, respectively. Finally, we used solid-state NMR to visualize the interaction between the membrane and MreBGs at the atomic level. Our findings reveal that MreBGs has similar affinity for both ATP and ADP, unlike eukaryotic actin. We also show that monomeric MreBGs establishes peripheral contacts with the membrane likely through electrostatic interactions, while ATP-induced MreBGs filaments insert into the lipid bilayer without interfering with the membrane lamellar phase and have a significant local fluidifying effect. Statement of significanceBacteria rely on the actin-like protein MreB to determine and maintain their cell shape, like actin does in eukaryotic cells. To perform its tightly regulated morphogenetic function, MreB forms membrane-associated nanofilaments in vivo, which control the cell wall biosynthetic machinery. We recently demonstrated that, in vitro, MreB from the Gram-positive bacterium Geobacillus stearothermophilus requires both ATP and lipids to polymerize into pairs of filaments. Here, we show that in the presence of ATP, Geobacillus MreB forms membrane-bound filaments that directly impact local membrane fluidity, which could translate into a regulatory effect on cell wall synthetic enzymes. We further reveal that MreB binds both ATP and ADP with similar affinity, unlike eukaryotic actin, which preferentially binds ATP over ADP, and speculate that this could be a mechanism modulating the pool of polymerization-competent MreB in bacteria.

biophysics↗

bioRxiv2024

Cell polarity control by an unconventional G-protein complex in bacteria

In Myxococcus xanthus, cell polarity and motility are regulated by the small GTPase MglA and its associated regulators, MglB, a potential GTPase Activating Protein and the RomRX complex, a potential Guanine nucleotide Exchange Factor. However, recent results have questioned the exact function of these regulators. Using a new type of fluorescent nucleotides for fluorescence-based anisotropy, we first demonstrate that RomRX does not function as a GEF but as an effector that binds strictly to MglAGTP. Secondly, based on an enzymology model, we found that MglB functions as a weak catalyst, unlike typical GAPs, and requires additional factors to dissociate from MglA. We demonstrate that RomRX, and specifically RomR, effectively competes with MglA by sequestering MglB. This low affinity interaction is still permissive for GAP activity but sufficient to partition these proteins in vivo as indicated by a biomimetic assay in oil emulsion droplets reconstituting these interactions in a cell-sized environment. These results suggest a new model for cell polarity where RomRX exerts a dual function, targeting MglAGTP to the pole via its effector function and preventing its accumulation at the lagging pole by destabilizing the MglA-MglB complex.

biochemistry↗

bioRxiv2023

Patterning of membrane adhesion under hydraulic stress

Hydraulic fracturing plays a major role in the formation of biological lumens during embryonic development, when the accumulation of pressurized fluid leads to the formation of microlumens that fracture cell-cell contacts and later evolve to form a single large lumen. However, the physical principles underpinning the formation of a pattern of microlumens from a pristine adhesion and their subsequent coarsening are poorly understood. Here, we use giant unilamellar vesicles adhered to a supported lipid bilayer and subjected to osmotic stress to generate and follow the dynamics of hydraulic fracturing akin to those in cells. Using this simplified system together with theoretical modelling and numerical simulations, we provide a mechanistic understanding of the nucleation of hydraulic cracks, their spatial patterns and their coarsening dynamics. Besides coarsening, we show that microlumens can irreversibly bud out of the membrane, reminiscent of endocytic vesicles in cell-cell adhesion. By establishing the physics of patterning and dynamics of hydraulic cracks, our work unveils the mechanical constraints for the biological regulation of hydraulically-driven adhesion remodeling.

biophysics↗

bioRxiv2017

Biphasic mechanosensitivity of TCR mediated adhesion of T lymphocytes

Force sensitivity of the T cell receptor (TCR) is now believed to be essential for immune recognition, but cellular mechanosensitivity of T cells is still poorly understood. Here we show that T cells adhering via the TCR-complex respond to environmental stiffness in an unusual biphasic fashion. As the stiffness increases, adhesion and spreading first increase, then decrease, attaining their maximal values on an optimally stiff surface, with stiffness comparable to certain antigen presenting cells. Remarkably, in presence of additional ligands for the integrin LFA-1, spreading increases monotonously with stiffness up to a saturation value. Using a mesoscopic semi-analytical model linking spreading to molecular characteristics of bonds, we identify force sensitivity of the off-rate and the effective bond stiffness as the crucial parameters that determine monotonic or biphasic mechanosensitive behavior.

biophysics↗