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Biology subjects

Diez, M.

Publications and source records attributed to Diez, M..

3 recordsLinked to original sources

Long-term vegetation change in protected calcareous fens is driven by land-use change and management abandonment

AimsHistorical land use has shaped plant diversity in Central Europe for centuries, and many plant communities of high conservation value have been maintained by long-term traditional management. This study assesses how changes in land use over the past century have affected plant community composition and vegetation-based ecological indicator values in the management-dependent mire community Primulo-Schoenetum ferruginei. LocationSouth-western Germany. MethodsWe conducted repeated vegetation surveys at multiple sites, comparing historical records with recent surveys spanning up to 97 years. Changes in species composition were analysed using multivariate approaches, and shifts in habitat conditions were assessed using indicator values for nutrients, temperature, light and mowing frequency. Information on historical management was compiled from original vegetation sources, while current management data were obtained from responsible conservation authorities and regional administration. ResultsFen communities showed pronounced temporal changes in species composition. Community turnover was significantly associated with shrub encroachment, mowing frequency, hay transfer and early mowing. In addition, species-based indicator values suggested increasing nutrient availability and temperature affinity of the vegetation, alongside decreasing light availability. Disturbance indicators pointed towards less frequent but more severe disturbance regimes in contemporary compared to historical vegetation. ConclusionsOur results demonstrate that management-dependent fen communities are highly sensitive to changes in land-use regimes, i.e. disturbance frequency and severity that is indicated to have significantly changed in the protected areas in this study. These findings highlight the importance of maintaining traditional land management practices when aiming to maintain biodiversity in calcareous fens.

ecology↗

Nucleolar Dynamics During Oogenesis

Ribosome biogenesis is a conserved and highly regulated process that starts in the nucleolus, a membrane-less multi-phase organelle. Although the architecture of the nucleolus is known to change due to perturbations, how nucleolar organization is modulated during physiological processes to meet changing translational demands remains unclear. Here, we use zebrafish oogenesis as a developmental context requiring a rapid expansion of translational capacity to investigate the regulation of nucleolar architecture. We show nucleoli undergo coordinated changes in number, size, subnuclear localization, and layering throughout oogenesis. We further demonstrate that nucleoli form around extrachromosomal DNA circles that contain the rDNA locus. Notably, mouse oocytes undergo similar developmental changes in nucleolar layering and phase organization, indicating that remodeling of nucleolar condensates is a conserved feature of oogenesis. These findings reveal previously unexplored regulation of nucleolar architecture as developmental adaptations to changing biosynthetic needs.

developmental biology↗

iCodon: ideal codon design for customized gene expression

Messenger RNA (mRNA) stability substantially impacts steady-state gene expression levels in a cell. mRNA stability, in turn, is strongly affected by codon composition in a translation-dependent manner across species, through a mechanism termed codon optimality. We have developed iCodon (www.iCodon.org), an algorithm for customizing mRNA expression through the introduction of synonymous codon substitutions into the coding sequence. iCodon is optimized for four vertebrate transcriptomes: mouse, human, frog, and fish. Users can predict the mRNA stability of any coding sequence based on its codon composition and subsequently generate more stable (optimized) or unstable (deoptimized) variants encoding for the same protein. Further, we show that codon optimality predictions correlate with expression levels using fluorescent reporters and endogenous genes in human cells and zebrafish embryos. Therefore, iCodon will benefit basic biological research, as well as a wide range of applications for biotechnology and biomedicine.

molecular biology↗