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Dick, C. W.

Publications and source records attributed to Dick, C. W..

2 recordsLinked to original sources

Widespread southern forests during the Last Glacial Maximum, not refugia, explain genetic structure of two eastern North American hickory species

AimPhylogeographic studies of temperate forest taxa often infer complex histories involving population subdivision into distinct refugia during the Last Glacial Maximum (LGM). However, temperate forests may have been broadly distributed in southeastern North America during the LGM. We investigate genome-wide genetic structure in two widespread eastern North America tree species to determine if range expansion from a contiguous area or from genetically isolated refugia better explains the postglacial history of trees and forests from this region.\n\nLocationEastern North America (ENA).\n\nTaxaBitternut hickory (Carya cordiformis (Wangenh.) K.Koch) and shagbark hickory (Carya ovata (Mill.) K.Koch).\n\nMethodsGenetic diversity and differentiation indices were calculated from >1,000 nuclear SNP loci genotyped in ca. 180 individuals per species sampled across ENA. Genetic structure was investigated using principle component analysis and genetic clustering algorithms. As an additional tool for inference, areas of suitable habitat during the LGM were predicted using species distribution models (SDMs).\n\nResultsPopulations across all latitudes showed similar levels of genetic diversity. Most genetic variation was weakly differentiated across ENA, with the exception of an outlier population of Carya ovata in Texas. Genetic structure in each species exhibited an isolation-by-distance pattern. SDMs predicted high LGM habitat suitability over much of the southeastern United States.\n\nMain conclusionsBoth hickory species likely survived the LGM in a large region of continuous habitat and recolonized northern areas in a single expanding front that encountered few migration barriers. More complex scenarios, such as forest refugia, need not be invoked to explain genetic structure. The genetically distinct Texas population of Carya ovata could represent a separate glacial refugium, but other explanations are possible. Relative to that of other temperate forest regions, the phylogeographic history of ENA may have been exceptionally simple, involving a northward range shift but without well defined refugia.

evolutionary biology

Comparative analysis of 24 chloroplast genomes yields highly informative genetic markers for the Brazil nut family (Lecythidaceae)

O_LIPremise of the study: The tropical tree family Lecythidaceae has enormous ecological and economic importance in the Amazon basin. Lecythidaceae species can be difficult to identify without molecular data, however, and phylogenetic relationships within and among the most diverse genera are poorly resolved.\nC_LIO_LIMethods: To develop informative genetic markers for Lecythidaceae, we used genome skimming to assemble de novo the full plastome of the Brazil nut tree (Bertholletia excelsa) and 23 other Lecythidaceae species. Indices of nucleotide diversity and phylogenetic signal were used to identify regions suitable for genetic marker development.\nC_LIO_LIResults: The B. excelsa plastome contained 160,472 bp and was arranged in a quadripartite structure. Using the 24 plastome alignments, we developed primers for 10 coding and non-coding DNA regions containing exceptional nucleotide diversity and phylogenetic signal. We additionally developed 19 chloroplast simple sequence repeats (cpSSRs) for population-level studies.\nC_LIO_LIDiscussion: The coding region ycf1 and the spacer rpl16-rps3 outperformed plastid DNA markers previously used for barcoding and phylogenetics. Used in a phylogenetic analysis, the matrix of 24 plastomes showed with 100% bootstrap support that Lecythis and Eschweilera are polyphyletic. The plastomes and primers presented in this study will facilitate a broad array of ecological and evolutionary studies in Lecythidaceae.\nC_LI

evolutionary biology