Biology subjects

Delhaye, G.

Publications and source records attributed to Delhaye, G..

9 recordsLinked to original sources

bioRxiv2026

Denisea fonensis (Thismiaceae), a new genus and species of mycoheterotroph from Guinea.

Distinct from plants which directly parasitise other plants (parasites), non-photosynthetic mycoheterophic plants (MHPs, previously known as achlorophyllous mycotrophs or saprophytes) depend upon fungal hyphae for their carbon and have been viewed as cheaters or parasites in their fungal partnerships rather than mutualistic as in most other plant-mycorrhizal interactions. Over 400 such species in 87 genera and 11 families are recorded which maintain this lifeform through their life-cycle, while an estimate 30,000 further species, mainly orchids, depend on this mode of life to establish themselves from seeds. In most cases the fungal partners and the ultimate carbon sources, usually autotrophic plants, are unknown. High fungal specificity is the norm in those MHPs researched. We describe a new MHP genus and species, Denisea fonensis that we discovered in the Simandou range of the Republic of Guinea, West Africa in October 2025 on the footprint of a mining project. While clearly placed in Dioscoreales (which has three MHP families), the features of Denisea are so unusual that it was not initially clear in which family to place it. Finally, with molecular data we placed Denisea in Thismiaceae, corroborated by morphology. The new discovery is all the more unexpected as this is the first record of Thismiaceae from West Africa. Until now the family has only been recorded in Africa from three species of the very different genus Oxygyne, of Cameroon and Central African Republic. We provisionally assess Denisea fonensis as Critically Endangered since less than ten individuals are recorded in only a few square metres at one site, where there are imminent threats from animals. We propose urgent measures to conserve this species to reduce the risk of global extinction that has eliminated other African MHP species such as Oxygyne triandra, and further research to determine the fungal and autotrophic plant partners of this remarkable plant genus.

plant biology↗

bioRxiv2026

High nitrogen deposition is associated with phosphorus-efficient ectomycorrhizas in Europe's Scots pine forests

Atmospheric inorganic nitrogen (N) deposition has been linked to increased tree phosphorus (P) deficiency and shifts in ectomycorrhizal (ECM) fungal community composition across Europe, but the underlying mechanisms remain poorly understood due to the scarcity of species-level studies of fungal physiology at large spatial scales. Here, we characterized ECM communities in nine Scots pine (Pinus sylvestris L.) stands across Europes largest N deposition gradient to gain mechanistic insight into N-driven ECM community shifts, by assessing morpho-physiological traits (i.e. soil exploration types and ECM root-tip level exoenzyme activities involved in organic N and P acquisition) on individual ectomycorrhizas. Our data revealed high functional variation in foraging strategies across species and sites, including within dominant ECM genera (Cortinarius, Elaphomyces, Lactarius, Piloderma, Russula). Shifts in community-level exoenzyme activities along the N deposition gradient were consistent with increasing P limitation, with a buffering effect of phosphomonoesterase activity on host nutritional status (i.e. reduced foliar N:P). These trends were mainly driven by interspecific differences in enzymatic profiles and species turnover along the gradient, rather than intraspecific variation within widespread species. Dominant low-biomass species in high N sites (e.g. E. citrinopapillatus, L. subdulcis, R. ochroleuca) were efficient P-foragers, with some displaying high oxidative activity, potentially hampering soil carbon storage under elevated N loads. These findings highlight the role of ECM species-specific traits in mediating ecosystem processes and can help understand the future of pine forests under chronic N pollution, with potential implications for applied forestry.

ecology↗

bioRxiv2026

Afrothismiaceae West of the Dahomey gap: Afrothismia fonensis sp. nov. Critically Endangered and endemic to Pic de Fon forest, Simandou, Republic of Guinea

The fully mycoheterotrophic, non-photosynthetic Afrothismia fonensis Cheek & G.Delhaye sp. nov. (Afrothismiaceae), is described and illustrated from two sites in submontane forest in or adjacent to the Pic de Fon Foret Classee, Simandou Range, Republic of Guinea. This is the first record of the genus and family in West Africa west of Nigeria. The new species is remarkable for its small size, and for being unique in the genus in the entirely connate intertepaline lobes (in other species of the genus they are free or only partly united) and the longitudinal ridges on the outer perianth tube (unknown in other species). The provisional extinction risk assessment for Afrothismia fonensis is Critically Endangered (CR B1ab (iii)+2ab(iii)+D1) using the IUCN 2012 categories and criteria, due to less than 50 individuals being recorded, and due to the both the very small range and the immediate threats from foraging by red river hogs, trampling by cattle and from de-watering of the adjacent Oueleba iron-ore body where mining began in 2025. It should be noted that mitigation actions are expected to adequately address the risks associated with mining activities, and direct impacts to both areas of Afrothismia fonensis habitat have been fully avoided through relocation of planned infrastructure. We review the importance of the Boyboyba forest, Simandou range, as the West African centre of diversity for non-photosynthetic heteromycotrophs. This new discovery is examined in the context of other recently discovered range extensions to Guinea of Central African genera and families.

plant biology↗

bioRxiv2026

MycorrhizaTracer: A BIOINFORMATIC PIPELINE FOR FUNGI AND PLANT CLASSIFICATION OF SANGER DNA SEQUENCES

Processing Sanger DNA sequences remains a routine yet technically demanding step in many biodiversity and ecological studies, particularly when barcoding large numbers of environmental samples. Manual inspection and editing of trace files, DNA sequence alignment, and classification using taxonomic reference databases is time-consuming, inconsistent, and prone to error. These challenges are compounded in studies involving degraded samples, in-house DNA sequencing, under-described taxa, or when investigators have limited access to computational tools. We present MycorrhizaTracer, an open-source, fully automated pipeline for processing and taxonomically classifying large batches of Sanger sequencing chromatograms. We have optimized it for fungal and plant taxa, but it is adaptable across the tree of life. The pipeline performs quality trimming, consensus generation from bidirectional reads, taxonomic classification via BLAST, clustering, optional salvaging of low-quality sequences, and functional annotation of fungal taxa. Designed for scalability and ease of use, MycorrhizaTracer can process thousands of DNA chromatograms in a matter of hours without the need for an HPC. Accuracy and ecological relevance are ensured by features such as gene region-specific taxonomic filtering and sequence-based clustering of unclassified reads. By streamlining trace-to-taxon workflows, MycorrhizaTracer reduces the burden of manual curation, supports reproducibility, and enables efficient recovery of biodiversity data from Sanger sequences - particularly in field-based or resource-limited research contexts.

bioinformatics↗

bioRxiv2026

Distinct but interacting functional filters of aridity and grazing shape Mediterranean mountain grasslands

Mediterranean mountain grasslands are ecosystems of high ecological and economic value. They are shaped by the dry and warm climate and land use, such as grazing, although the combined effects of both drivers remain poorly understood. In this study, we analyzed shifts in functional composition in thirty-two plant communities in Mediterranean mountain grasslands of the Pindos Range (Greece) by measuring five plant functional traits related to resource acquisition in dominant plant species. We examined the adaptive value of each trait as well as community-level responses along a well-defined two-dimensional gradient of grazing intensity and aridity, using mixed models and functional diversity analyses, and tested whether individual species trait shifts are related to aridity and grazing intensity. At the community level, aridity decreased plant height and leaf area whereas grazing only affected traits associated with tissue recovery such as high specific leaf area (SLA) and low community-weighted mean leaf dry matter content (LDMC). As aridity increased, plant height functional dispersion decreased. This convergence pattern indicates a shift towards more similar growth forms under arid conditions. Species-specific analysis indicated various responses of traits to the interaction of aridity and grazing that could not be detected using only community-level patterns. Overall, our findings demonstrate that aridity and grazing act through separate functional axes at the community level, while their combined effects emerge through species-specific trait plasticity.

ecology↗

bioRxiv2024

Interspecific trait differences drive plant community responses on serpentine soils.

O_LISerpentine ecosystems are characterized by multiple environmental stressors such as high levels of trace metals such as nickel (Ni), low availability of macronutrients and low water retention. These harsh environmental conditions exert a strong selective force on the vegetation, but their effect on the functional trait composition of the communities remains unknown. C_LIO_LIIn 26 plots on four serpentine sites on Lesbos Island (Greece), we measured six leaf functional traits related to resource acquisition and stress resistance on the 20 most abundant plant species. We quantified the proportion of variance explained by inter- and intraspecific traits difference and tested if individual species show changes in trait values explained by soil Ni content. We investigated the selective value and the community level changes for each trait along the natural soil Ni gradient using a species multilevel model approach and functional diversity analyses. We also tested the role of the abundant serpentine endemic Odontarrhena lesbiaca in driving these patterns. C_LIO_LIIntraspecific variation explained by soil Ni content is smaller than 2%, with most of the variance being explained by interspecific differences in trait values and most species do not show significant changes in trait values. At the community level, leaf thickness is the only trait driving an increase in species abundance along the gradient. Functional diversity analyses suggest a shift towards a stress tolerance syndrome (thick leaves with low SLA values) on Ni rich soils, but an increase in the diversity of these traits. However, these patterns are driven by the increasing abundance of O. lesbiaca. When this species is excluded, there is an increase in the community mean leaf area and SLA, suggesting that the community does not respond to metallic stress with classical stress syndromes. C_LI Synthesis. Intraspecific variation in leaf trait responds little to soil metal toxicity. Endemic species harbour original trait values compared to species with broad distribution which should justify their conservation as a priority.

ecology↗

bioRxiv2024

Ectomycorrhizal fungi are influenced by ecoregion boundaries across Europe

AimEcoregions and the distance decay in community similarity are fundamental concepts in biogeography and conservation biology that are well supported across plants and animals, but not fungi. Here we test the relevance of these concepts for ectomycorrhizal (ECM) fungi in temperate and boreal regions. LocationEurope. Time period2008 - 2015. Major taxa studiedEctomycorrhizal fungi. MethodsWe used a large dataset of [~] 24,000 ectomycorrhizas, assigned to 1,350 operational taxonomic units, collected from 129 forest plots via a standardised protocol. We investigated the relevance of ecoregion delimitations for ECM fungi through complementary methodological approaches based on distance decay models, multivariate analyses, and indicator species analyses. We then evaluated the effects of host tree and climate on the observed biogeographical distributions. ResultsEcoregions predict large-scale ECM fungal biodiversity patterns. This is partly explained by climate differences between ecoregions but independent from host tree distribution. Basidiomycetes in the orders Russulales and Atheliales and producing epigeous fruiting bodies, with potentially short-distance dispersal, show the best agreement with ecoregion boundaries. Host tree distribution and fungal abundance (as opposed to presence/absence only) are important to uncover biogeographical patterns in mycorrhizas. Main conclusionsEcoregions are useful units to investigate eco-evolutionary processes in mycorrhizal fungal communities and for conservation decision-making that includes fungi.

ecology↗

bioRxiv2023

Assessing above and belowground recovery from ammonium sulfate addition and wildfire in a lowland heath: mycorrhizal fungi as potential indicators

Atmospheric pollution containing soil-nitrifying ammonium sulphate is affecting semi-natural ecosystems worldwide. Long-term additions of ammonium sulphate on nitrogen (N)-limited habitats such as heathlands increase climate stress affecting recovery from wildfires. Yet although heathland vegetation largely depends on ericoid mycorrhizal fungi (ErM) to access soil N, we lack a detailed understanding of how prolonged exposure to ammonium sulphate may alter ErM community composition and host plants reliance on fungal partners following wildfire and substantial reductions in ammonium sulphate pollution. Effects on ecosystem processes, particularly carbon stores, also remain uncertain. Ammonium sulphate additions occurred bi-weekly for five years after a 2006 wildfire burnt a UK heathland. Ten years after the treatments ceased (2021), we measured vegetation structure, lichen and lichen photobiont composition, soil characteristics, ErM colonisation, ErM diversity in roots and soil, and assessed their potential as recovery indicators. We found heather height and density, and moss groundcover, were greater in N-enriched plots. Lichen community indices showed significant treatment effects without photobiont differences. Soil pH and Mg, and the proportion of putative ErM fungi in soil were significantly lower in treated plots while soil cation exchange capacity was significantly higher. Increases in soil pH were positively correlated to soil ErM abundance. Soil carbon stock measures were variable and negatively related with soil ErM. Our results indicate that atmospheric pollution following fire can have significant lingering effects and mycorrhizal fungi diversity are a novel and effective ecological tool to assess ecosystem recovery on heathlands. IMPLICATIONS FOR PRACTICEO_LIRecovery of heathlands from wildfire and atmospheric pollution may require decadal scales. Conventional restoration assessment tools lack critical understanding of belowground soil and mycorrhizal fungi interactions and nutritional feedback loops with aboveground hosts. C_LIO_LIGiven that ericoid mycorrhizal fungi (ErM) communities are key nutrient regulators of resilient heathlands, we recommend baseline measurements of ErM diversity and abundance in both soil and dominant plant roots be added to the recovery assessment toolkit prior to commencing restoration or management plans. C_LIO_LIWhat defines ErM recovery, and disentangling effects of ammonium sulphate pollution and fire, remain open questions which only long-term field experiments across pollution gradients will address. C_LI

ecology↗

bioRxiv2021

Tropical tree growth sensitivity to climate is driven by species intrinsic growth rate and leaf traits

A better understanding of how climate affects growth in tree species is essential for improved predictions of forest dynamics under climate change. Long-term climate averages (mean climate) and short-term deviations from these averages (anomalies) both influence tree growth, but the rarity of long-term data integrating climatic gradients with tree censuses has so far limited our understanding of their respective role, especially in tropical systems. Here, we combined 49 years of growth data for 509 tree species across 23 tropical rainforest plots along a climatic gradient to examine how tree growth responds to both climate means and anomalies, and how species functional traits mediate these tree growth responses to climate. We showed that short-term, anomalous increases in atmospheric evaporative demand and solar radiation consistently reduced tree growth. Drier forests and fast-growing species were more sensitive to water stress anomalies. In addition, species traits related to water use and photosynthesis partly explained differences in growth sensitivity to both long-term and short-term climate variations. Our study demonstrates that both climate means and anomalies shape tree growth in tropical forests, and that species traits can be leveraged to understand these demographic responses to climate change, offering a promising way forward to forecast tropical forest dynamics under different climate trajectories.

ecology↗