Biology subjects

Deering, S.

Publications and source records attributed to Deering, S..

3 recordsLinked to original sources

bioRxiv2025

Efficient CRISPR-Cas9-mediated genome editing of the cane toad (Rhinella marina)

Invasive species inflict major ecological, economic, social, and cultural harm worldwide, highlighting the urgent need for innovative and effective control strategies. Genome editing offers exciting possibilities for creating highly targeted control methods for invasive species. Here, we demonstrate CRISPR-Cas9 genome editing in the cane toad (Rhinella marina), one of Australias most notorious invasive species, by targeting the tyrosinase gene to produce albino phenotypes that provide clear visual markers for assessing editing efficiency. Microinjection of Cas9 protein and guide RNAs into one-cell zygotes resulted in 87.6% of mosaic larvae displaying nearly complete albinism, with 2.3% exhibiting complete albinism. For completely albino individuals, genomic analysis confirmed predominantly frameshift mutations or large deletions at the target site, with no wild-type alleles detected. Germline transmission rates reflected the extent of albinism in the mosaic adult, where we achieved maternal germline transmission rates of almost 100%. This technology, representing the first application of CRISPR-Cas9 in the Bufonidae family, opens possibilities for exploring both basic research questions and strategies for population control.

synthetic biology↗

bioRxiv2025

Antennal RNAseq reveals odorant receptors with sex-biased expression in the common eastern firefly, Photinus pyralis

BackgroundWith their charismatic nighttime flashes, fireflies are a classic organismal system for studying visual mating signal evolution. However, across their diversity, fireflies employ a variety of mating strategies that include both chemical and visual signals. While phylogenetic evidence points to a common ancestor that relied on long-range pheromones, behavioral evidence suggests that light-dependent flashing fireflies do not use smell for mating. We tested this hypothesis by investigating the olfactory genetics of the nocturnal, light-using common eastern firefly, Photinus pyralis. In insects, odors are primarily detected by odorant receptor (OR) proteins embedded in the dendritic membranes of olfactory receptor neurons. If pheromones are part of mate signaling in light-using fireflies, then one or more OR genes should be upregulated in the antennae of the searching sex (males). We therefore annotated the complete suite of ORs from the genome of P. pyralis and measured expression of OR genes between the sexes. ResultsWe identified 102 ORs in the Photinus pyralis genome, including the conserved single-copy Orco. Our phylogenetic analysis showed lineage-specific OR diversification in P. pyralis relative to other beetle species. Differential expression analysis of male and female antennae and hind legs revealed that a subset of ORs are upregulated in antennae as compared to legs, suggesting a role in adult olfaction. Notably, PpyrOR6 was one of two genes, and the only OR, that was significantly upregulated between male and female antennae, suggesting a role in mating. ConclusionsThese findings increase known diversity of insect ORs in an understudied beetle family and suggest that bioluminescent fireflies use multimodal signals during mating.

evolutionary biology↗

bioRxiv2017

When conflict cannot be avoided: executive control dominates early selective sensory modulations during cognitive conflict

When different sources of sensory information suggest competing behavioral responses, the efficiency of decision-making is impaired. Prior work suggests that at least two mechanisms may play a role in mitigating this interference: using early selective attention to extract the most relevant sensory inputs to avoid conflict or increasing the efficiency of the executive control network to resolve conflict during post-perceptual processing. To test these alternatives, we combined a stimulus-frequency tagging technique with a classic color-word Stroop paradigm, where color-bar targets and letter-string distractors were simultaneously flickered at different frequencies. Using electroencephalography (EEG), we measured the quality of early sensory processing by assessing the amplitude of steady-state visually evoked potentials (SSVEPs) elicited by the targets and distractors. We also measured the engagement of the executive control network by assessing changes in frontal theta (4-7Hz) and posterior alpha oscillations (8-14Hz). Counter to the early selective sensory modulation account, the amplitude of the SSVEP response was not modulated by manipulations of color/word congruency, while the frontal theta activity increased and the posterior alpha activity decreased in response to conflict. Moreover, target-related SSVEP amplitude was not correlated with response times (RTs) and a higher (not lower) distractor-related SSVEP amplitude predicted faster RTs. On the other hand, the amplitude of the frontal theta and alpha activity was highly correlated with RTs, irrespective of conflict levels. Over all, these results highlight the dominant role of the executive control network in conflict resolution during post-perceptual processing.\n\nSignificance StatementConflicting information interferes with decision-making. However, this interference can be mitigated either by extracting the most relevant inputs during early sensory processing or by increasing the efficiency of the executive control processes to resolve conflict. By measuring electroencephalography (EEG) in humans performing a modified color-word Stroop task, we examined early sensory responses evoked by targets and distractors while simultaneously monitoring frontal theta and posterior alpha oscillations to index the activation of the executive control network. We found evidence that the executive control network played a more prominent role in resolving conflict.

neuroscience↗