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De Lisle, S.

Publications and source records attributed to De Lisle, S..

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Adaptive excursions across the drift barrier

Random genetic drift, rather than selection, is expected to determine the dynamics of alleles with fitness effects that fall below the reciprocal of effective population size (Ne). This is the drift barrier. The drift barrier hypothesis suggests that adaptation may be hopelessly constrained in organisms with low Ne, with much of the complexity of life reflecting a byproduct of ineffective natural selection. Yet decades of empirical research in evolutionary ecology provides substantial evidence of adaptation in finite metazoan populations. Here I explore the extent to which the drift barrier may, or may not, constrain contemporary adaptive divergence under directional selection in the wild. Compensatory directional selection on polygenic traits occurring after the fixation of a deleterious allele will be twice as efficient compared to the initial action of stabilizing selection. Consistent with this result, meta analysis reveals a negative relationship between contemporary estimates of Ne and the strength of directional selection in natural populations. Analysis of empirical phenotypic selection gradients from wild metazoans further reveals that directional selection is often strong enough to overcome the constraints imposed by finite population size, across a range of genetic architectures. Moreover, on a multi-peak adaptive landscape, the probability of a peak shift between adaptive zones increases exponentially as Ne declines, with observed values of contemporary Ne typically being well within the range needed for peak shift models to be a viable explanation of diversity. Together, these results suggest that widespread adaptation in metazoans is not inconsistent with the fundamental constraints on perfection imposed by drift.

evolutionary biology↗

Evolutionary change is remarkably constant across timescales

Rates of molecular, phenotypic, and lineage diversification typically scale negatively with time interval of measurement, raising longstanding questions about time-dependency of evolutionary processes. These patterns and their potential meaning have recently re-entered evolutionary discussions. In this Perspective we revisit the general challenges in interpreting rate-time relationships. Much apparent temporal scaling of evolutionary rate is an inescapable outcome of plotting a ratio against its denominator, either directly or indirectly. Highly unlikely relationships between timescale and accumulated evolutionary change are required to produce anything other than negative rate-time relationships. Simulations reveal that constant rate evolutionary processes readily generate negative rate-time scaling relationships under many conditions, and that a range of rate-time scaling exponents can be generated by similar evolutionary processes. Reanalysis of six empirical datasets reveals unscaled magnitudes of evolution that are either unrelated to time and/or vary in their relationship with time, with over 99% of variation in rate-time relationships across six datasets explained by time variation alone. We further evaluated a recent hypothesis that evolutionary rate-time scaling reflects three modes of change, from micro- to macroevolutionary time scales using break-point regression, but we found no strong support for this hypothesis. Taken together, negative rate-time relationships are largely inevitable and difficult to interpret. In contrast, it is more straightforward to assess how evolutionary change accumulates with time.

evolutionary biology↗

Evolution of a costly immunity to cestode parasites is a pyrrhic victory

Parasites impose fitness costs on their hosts. Biologists therefore tend to assume that natural selection favors infection-resistant hosts. Yet, when the immune response itself is costly, theory suggests selection may instead favor loss of resistance. Immune costs are rarely documented in nature, and there are few examples of adaptive loss of resistance. Here, we show that when marine threespine stickleback colonized freshwater lakes they gained resistance to the freshwater-associated tapeworm, Schistocephalus solidus. Extensive peritoneal fibrosis and inflammation contribute to suppression of cestode growth and viability, but also impose a substantial cost of reduced fecundity. Combining genetic mapping and population genomics, we find that the immune differences between tolerant and resistant populations arise from opposing selection in both populations acting, respectively, to reduce and increase resistance consistent with divergent optimization. One Sentence SummaryRecently-evolved freshwater populations of stickleback frequently evolve increased resistance to tapeworms, involving extensive fibrosis that suppresses parasite growth; because this fibrosis greatly reduces fish fecundity, in some freshwater populations selection has favored an infection-tolerant strategy with fibrosis suppression.

evolutionary biology↗

Interacting Phenotypes and the Coevolutionary Process

Coevolution occurs when species interact to influence one anothers fitness, resulting in reciprocal evolutionary change. In many coevolving lineages, trait expression in one species is modified by the genotypes and phenotypes of the other, forming feedback loops reminiscent of models of intraspecific social evolution. Here, we adapt the theory of within-species social evolution, characterized by indirect genetic effects and social selection imposed by interacting individuals, to the case of interspecific interactions. In a trait-based model, we derive general expressions for multivariate evolutionary change in two species and the expected between-species covariance in evolutionary change when selection varies across space. We show that reciprocal interspecific indirect genetic effects can dominate the coevolutionary process and drive patterns of correlated evolution beyond what is expected from direct selection alone. In extreme cases, interspecific indirect genetic effects can lead to coevolution when selection does not covary between species or even when one species lacks genetic variance. Moreover, our model indicates that interspecific indirect genetic effects may interact in complex ways with cross-species selection to determine the course of coevolution. Importantly, our model makes empirically testable predictions for how different forms of reciprocal interactions contribute to the coevolutionary process.

evolutionary biology↗

Peak shifts and extinction under sex-specific selection

A well-known property of sexual selection combined with a cross sex genetic correlation (rmf), is that it can facilitate a peak shift on the adaptive landscape. How do these diversifying effects of sexual selection + rmf balance with the constraints imposed by such sexual antagonism, to affect macroevolution of sexual dimorphism? Here, I extend existing quantitative genetic models of evolution on complex adaptive landscapes. Beyond recovering classical predictions for the conditions promoting a peak shift, I show that when rmf is moderate to strong, relatively weak sexual selection is required to induce a peak shift in males only. Increasing the strength of sexual selection leads to a sexually-concordant peak shift, suggesting that macroevolutionary rates of sexual dimorphism may be largely decoupled from the strength of within-population sexual selection. Accounting explicitly for demography further reveals that sex-specific peak shifts may be more likely to be successful than concordant shifts in the face of extinction, especially when natural selection is strong. An overarching conclusion is that macroevolutionary patterns of sexual dimorphism are unlikely to be readily explained by within-population estimates of selection or constraint alone.

evolutionary biology↗

Phenotypic plasticity is aligned with phenological adaptation on micro- and macroevolutionary timescales

In seasonally-variable environments, phenotypic plasticity in phenology may be critical for adaptation to fluctuating environmental (temperature) conditions. Using an 18-generation longitudinal dataset from natural insect (damselfly) populations, we show that phenology has strongly advanced. Individual fitness data suggest this is likely an adaptive response towards a thermally-dependent fitness optimum. A laboratory experiment revealed that developmental plasticity qualitatively matches environmental-dependence of selection, partially explaining observed phenological advance. Expanding our analysis to the macroevolutionary level, we use a database of over 1-million occurrence records and spatiotemporally-matched temperature data from 49 Swedish Odonate species to infer macroevolutionary dynamics of phenology. Phenological plasticity was more closely aligned with adaptation for species that have recently colonized northern latitudes, with more phenological mismatch at lower latitudes. Our results show that phenological plasticity plays a key role in microevolutionary dynamics within a single species, and such plasticity may have facilitated post-Pleistocene range expansion in this insect clade.

evolutionary biology↗

A Multivariate View of Parallel Evolution

A growing number of empirical studies have quantified the degree to which evolution is geometrically parallel, by estimating and interpreting pairwise angles between evolutionary change vectors in multiple replicate lineages. Similar comparisons, of distance in trait space, are used to assess the degree of convergence. These approaches amount to element-by-element interpretation of distance matrices, and can fail to capture the true extent of multivariate parallelism when evolution involves multiple traits sampled across multiple lineages. We suggest an alternative set of approaches, co-opted from evolutionary quantitative genetics, involving eigen analysis and comparison of among-lineage covariance matrices. Such approaches not only allow the full extent of multivariate parallelism to be revealed and interpreted, but also allow for the definition of biologically tenable null hypotheses against which empirical patterns can be tested. Reanalysis of a dataset of multivariate evolution across a replicated lake/stream gradient in threespine stickleback reveals that most of the variation in the direction of evolutionary change can be captured in just a few dimensions, indicating a greater extent of parallelism than previously appreciated. We suggest that applying such multivariate approaches may often be necessary to fully understand the extent and form of parallel and convergent evolution.

evolutionary biology↗

Extinction and the temporal distribution of macroevolutionary bursts

Phenotypic evolution through deep time is slower than expected from microevolutionary rates. This is the paradox of stasis. Previous models suggest stasis occurs because populations track adaptive peaks that typically move on million-year intervals, raising the equally perplexing question of why peaks shifts are so rare. Here, we consider the possibility that peaks can move more rapidly than populations can adapt, resulting in extinction. We model peak movement with explicit population dynamics, parameterized with published microevolutionary parameters. Allowing extinction greatly increases the parameter space of peak movements that yield the appearance of stasis observed in real data through deep time. Our work highlights population ecology as an important contributor to macroevolutionary dynamics, presenting an alternative perspective on the paradox of stasis where apparent constraint on phenotypic evolution in deep time reflects our restricted view of the subset of earths lineages that were fortunate enough to reside on relatively stable peaks.

evolutionary biology↗

Consumer sexual dimorphism promotes coexistence among competing resources

Sexual dimorphism is a ubiquitous source of within-species variation, yet the communitylevel consequences of sex differences remain poorly understood. Here, we analyze a bitrophic model of two competing resource species and a sexually-reproducing consumer species. We show that consumer sex differences in resource acquisition can have striking consequences for consumer-resource coexistence, abundance, and dynamics. Under both direct interspecific competition and apparent competition between two resource species, sexual dimorphism in consumers attack rates can mediate coexistence of the resource species, while in other cases can lead to exclusion when stable coexistence is typically expected. Slight sex differences in total resource acquisition also can reverse competitive outcomes and lead to density cycles. These effects are expected whenever both consumer sexes require different amounts or types of resources to reproduce. Our results suggest that consumer sexual dimorphism, which is common, has wide-reaching implications for the assembly and dynamics of natural communities. Statement of authorshipDB SD and SJS designed the study, SJS performed the mathematical analysis, SD performed the simulations and drafted the manuscript. All authors revised the manuscript. Data accessibility statementNo data is used

ecology↗