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De Leeuw, W. C.

Publications and source records attributed to De Leeuw, W. C..

3 recordsLinked to original sources

Modulation of rob expression accelerates development of antibiotic resistance in Yersinia enterocolitica

Multidrug-resistant bacteria pose a severe threat to global health. Mutations in transcriptional regulators accelerate the emergence of multidrug resistance and may have a crucial impact on pathogen evolvability under antibiotic exposure. Here, we investigate these dynamics in the bacterial pathogen Yersinia enterocolitica. In this organism, we identified a high-frequency de novo mutation in the promoter of an AraC/XylS-family transcriptional regulator, Rob. This mutation arose independently during resistance evolution against three of six antibiotic classes. Sequence and structure alignments indicate that Rob is a previously uncharacterized, lineage-specific regulator in Y. enterocolitica, featuring a conserved promoter architecture. This promoter mutation resulted in robust rob overexpression, leading to the activation of multiple downstream efflux- and membrane-associated pathways. This regulatory mutation emerges early and shapes the acquisition of tetracycline resistance, while also enhancing high-level enrofloxacin resistance in combination with canonical mutations in gyrA and parC. Despite being favored under antibiotic selection, rob overexpression is costly, resulting in counter-selection of the -57 G>A rob allele in the absence of antibiotics. Together, these findings identify Rob as a Yersinia-specific efflux regulator and demonstrate how regulatory mutations can transiently accelerate antibiotic resistance. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=80 SRC="FIGDIR/small/707304v1_ufig1.gif" ALT="Figure 1"> View larger version (30K): org.highwire.dtl.DTLVardef@107aa88org.highwire.dtl.DTLVardef@4ccd66org.highwire.dtl.DTLVardef@411e2aorg.highwire.dtl.DTLVardef@1235fbc_HPS_FORMAT_FIGEXP M_FIG C_FIG

microbiology↗

New observations on non-coding RNAs involved in the dual translation system in zebrafish development.

Cellular translation relies heavily on the involvements of several types of non-coding RNAs. In previous studies we have identified a dual translation system in zebrafish development, involving maternal-type and somatic-type rRNAs, snoRNAs, and snRNAs. In this study we focused on several remaining non-coding RNAs involved in the translation system; tRNAs, RNase P, and SRP RNA. Even though our studies have been limited in extent, for all three types of non-coding RNA we were able to identify a maternal-specific type, with substantial sequence differences as compared to the somatic-type variant. Hence, these RNA types complement the previously discovered RNA types in the unique dual translation system in zebrafish development.

developmental biology↗

Maternal- and Somatic-type snoRNA Expression and Processing in Zebrafish Development

Small nucleolar RNAs (snoRNAs) are non-coding RNAs that play an important role in the complex maturation process of ribosomal RNAs (rRNAs). SnoRNAs are categorized in classes, with each class member having several variants present in a genome. Similar to our finding of specific rRNA expression types in zebrafish embryogenesis, we discovered preferential maternal- and somatic-expression for snoRNAs. Most snoRNAs and their variants have higher expression levels in somatic tissues than in eggs, yet we identified three snoRNAs; U3, U8 and snoZ30 of which specific variants show maternal- or somatic-type expression. For U3 and U8 we also found small-derived snoRNAs that lack their 5 rRNA recognition part and are essentially Domain II hairpin structures (U-DII). These U-DII snoRNAs from variants showed similar preferential expression, in which maternal-type variants are prominently expressed in eggs and subsequently replaced by a somatic-type variants during embryogenesis. This differential expression is related to the organization in tandem repeats (maternal type) or solitary (somatic-type) genes of the involved U snoRNA loci. The collective data showed convincingly that the preferential expression of snoRNAs is achieved by transcription regulation, as well as through RNA processing. Finally, we observed small-RNAs derived from internal transcribed spacers (ITSs) of a U3 snoRNA loci that via complementarity binding, may be involved in the biosynthesis of U3-DII snoRNAs. Altogether, the here described maternal- and somatic-type snoRNAs are the latest addition to the developing story about the dual ribosome system in zebrafish development.

developmental biology↗