Biology subjects

Davidson, F. A.

Publications and source records attributed to Davidson, F. A..

3 recordsLinked to original sources

bioRxiv2022

Systematic microscopical analysis reveals obligate synergy between extracellular matrix components during Bacillus subtilis colony biofilm development

Single-species bacterial colony biofilms often present recurring morphologies that are thought to be of benefit to the population of cells within and known to be dependent on the self-produced extracellular matrix. However, much remains unknown in terms of the developmental process at the single cell level. Here, we design and implement systematic time-lapse imaging and quantitative analyses of the growth of Bacillus subtilis colony biofilms. We follow development from the initial deposition of founding cells through to the formation of large-scale complex structures. Using the model biofilm strain NCIB 3610, we examine the movement dynamics of the growing biomass and compare with those displayed by a suite of otherwise isogenic matrix-mutant strains. Correspondingly, we assess the impact of an incomplete matrix on biofilm morphologies and sessile growth rate. Our results indicate that radial expansion of colony biofilms results from division of bacteria at the biofilm periphery rather than being driven by swelling due to fluid intake. Moreover, we show that lack of exopolysaccharide production has a negative impact on cell division rate, and the extracellular matrix components act synergistically to give the biomass the structural strength to produce aerial protrusions and agar substrate-deforming ability.

microbiology↗

bioRxiv2021

A theoretical framework for multi-species range expansion in spatially heterogeneous landscapes

Range expansion is the spatial spread of a population into previously unoccupied regions. Understanding range expansion is important for the study and successful manipulation and management of ecosystems, with applications ranging from controlling bacterial biofilm formation in industrial and medical environments to large scale conservation programmes for species undergoing climate-change induced habitat disruption. During range expansion, species typically encounter competitors. Moreover, the environment into which expansion takes place is almost always heterogeneous when considered at the scale of the individual. Despite the ubiquitous nature of these features, the impact of competition and spatial landscape heterogeneities on range expansion remains understudied. In this paper we present a theoretical framework comprising two competing generic species undergoing range expansion and use it to investigate the impact of spatial landscape heterogeneities on range expansion with a particular focus on its effect on competition dynamics. We reveal that the area covered by range expansion during a fixed time interval is highly variable due to the fixed landscape heterogeneities. Moreover, we report significant variability in competitive outcome (relative abundance of a focal species) but determine that this is induced by low initial population densities, independent of landscape heterogeneities. We further show that both area covered by range expansion and competitive outcome can be accurately predicted by a Voronoi tessellation with respect to an appropriate metric, which only requires information on the spatial landscape and the response of each species to that landscape. Finally, we reveal that if species interact antagonistically during range expansion, the dominant mode of competition depends on the initial population density. Antagonistic actions determine competitive outcome if the initial population density is high, but competition for space is the dominant mode of competition if the initial population density is low.

ecology↗

bioRxiv2021

Founder cell configuration drives competitive outcome within colony biofilms

Bacteria typically form dense communities called biofilms, where cells are embedded in a self-produced extracellular matrix. Competitive interactions between strains within the biofilm context are studied due to their potential applications in biological, medical, and industrial systems. Combining mathematical modelling with experimental assays, we reveal that the spatial structure and the competitive dynamics within biofilms are significantly affected by the location and density of founder cells. Using an isogenic pair of Bacillus subtilis strains, we show that the observed spatial structure and relative strain biomass in a mature biofilm can be mapped directly to the locations of founder cells. Moreover, we define a predictor of competitive outcome that accurately forecasts relative abundance of strains based solely on the founder cells access to free space. Consequently, we reveal that variability of competitive outcome in biofilms inoculated at low founder density is a natural consequence of the random positioning of founding cells in the inoculum. Extending our study to non-isogenic strain pairs of B. subtilis, we show that even for strains with different antagonistic strengths, a race for space remains the dominant mode of competition in biofilms inoculated at low founder densities. Our results highlight the importance of spatial dynamics on competitive interactions within biofilms and hence to related applications.

microbiology↗