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David, S. R.

Publications and source records attributed to David, S. R..

4 recordsLinked to original sources

Smoothing over "rough" mismanagement: establishing protective harvest limits for native nongame fishes

There is growing interest in establishing more protective regulations for native fishes historically classified as "rough fish"- a term ascribed to species of low-to-zero perceived commercial value. Yet high-quality population data are lacking for most species and populations, precluding determination of sustainable harvest limits using standard methods. Here, we present an inductive and ecosystem -based approach for comparing and aligning harvest limits of diverse fish species. Our approach centers on the production/biomass (P/B) ratio as the key instrument for gauging sustainable harvest. P/B is the biomass turnover rate in populations and therefore quantifies the return rate of any removed biomass in populations. We extracted and summarized data from existing studies, representing a total of 517 empirical estimates of secondary production, biomass, and P/B ratios. We subsequently developed a highly predictive statistical model (R2 = 0.90), demonstrating P/B is largely a function of maximum age across species. We then developed a separate database on age, growth, and longevity data for most native fishes of interest across the USA. For each species and population, we leveraged the above statistical model to predict and compare mean P/B across species. Results show most native fishes express P/B values similar to, or lower than, traditional game fish species. Accordingly, harvest limits across species groups can be harmonized with those of other managed species. For example, native nongame species like Bigmouth Buffalo Ictiobus cyprinellus and Freshwater Drum Aplodinotus grunniens are long-lived with slow replacement rates that are statistically clustered with those observed in Lake Sturgeon Acipenser fulvescens and trophy Muskellunge Esox masquinongy populations, two popular game fish species. Harvest limits for these nongame species would therefore need to be similarly low for these species to ensure comparable sustainability. To understand broad patterns of harvest limit alignment, we modeled relationships between daily bag limits of managed species and P/B for five test states. Model uniformly showed non-linear trends with high residuals (suggesting excessive bag limits) common for panfish species and low residuals (suggesting overly conservative bag limits) common for trout species. Managers can use the results of this study to estimate harvest limits native fishes.

ecology↗

Myosin II independent contraction of actin filaments in membrane nanotubes

The ability to generate active stresses within filamentous actin matrices is a fundamental and evolutionarily conserved process driving locomotion and morphogenetic changes in cells. The generation of pushing forces by actin polymerization is reasonably well understood, and is known to drive lamellipodia based motility and filopodial extension. Actin filaments decorated with myosin motors can also generate contractile stresses as in the cell cortex or in cytokinetic rings. In this article we use membrane nanotubes pulled out of axonal shaft to investigate actin dynamics and force generation. We report cyclic growth and retraction dynamics of actin within the tube and correlated contraction events giving rise to sustained load and fail cycles. The contraction mechanism operate independent of myosin II motor proteins. Furthermore, we analyzed the dynamics of actin within the tube, including under various biochemical or genetic perturbations. By combining these results with physical modeling, we argue that stresses generated in the actin filaments by the binding of actin depolymerizing factor (ADF/cofilin) proteins can explain the cyclic load-fail behavior.

biophysics↗

Controlled experiment finds no detectable citation bump from Twitter promotion

Multiple studies across a variety of scientific disciplines have shown that the number of times that a paper is shared on Twitter (now called X) is correlated with the number of citations that paper receives. However, these studies were not designed to answer whether tweeting about scientific papers causes an increase in citations, or whether they were simply highlighting that some papers have higher relevance, importance or quality and are therefore both tweeted about more and cited more. The authors of this study are leading science communicators on Twitter from several life science disciplines, with substantially higher follower counts than the average scientist, making us uniquely placed to address this question. We conducted a three-year-long controlled experiment, randomly selecting five articles published in the same month and journal, and randomly tweeting one while retaining the others as controls. This process was repeated for 10 articles from each of 11 journals, recording Altmetric scores, number of tweets, and citation counts before and after tweeting. Randomization tests revealed that tweeted articles were downloaded 2.6-3.9 times more often than controls immediately after tweeting, and retained significantly higher Altmetric scores (+81%) and number of tweets (+105%) three years after tweeting. However, while some tweeted papers were cited more than their respective control papers published in the same journal and month, the overall increase in citation counts after three years (+7% for Web of Science and +12% for Google Scholar) was not statistically significant (p > 0.15). Therefore while discussing science on social media has many professional and societal benefits (and has been a lot of fun), increasing the citation rate of a scientists papers is likely not among them.

scientific communication and education↗

Hidden species diversity in a living fossil vertebrate

Ancient, species-poor lineages persistently occur across the Tree of Life. These evolutionarily unique lineages are likely to contain unrecognized species diversity masked by the low rates of morphological evolution that characterize living fossils [1, 2]. Halecomorphi is a major clade of ray-finned fishes that diverged from its closest relatives over 200 million years ago [3, 4] yet is represented by only one recognized living species in eastern North America, the Bowfin Amia calva Linnaeus. Here, we use double digest restriction-site associated DNA (ddRAD) sequencing and high-resolution computed tomography to illuminate recent speciation in the bowfins. Our results support the resurrection of a second living species of Bowfin with the timing of diversification dating to the Pleistocene. In turn, we expand the species diversity of an ancient lineage that is integral to studies of vertebrate genomics and development [2, 3, 5], yet is facing growing conservation threats driven by the caviar fishery [6].

evolutionary biology↗