bioRxiv Science⌕ Search

Biology subjects

Dastager, S.

Publications and source records attributed to Dastager, S..

2 recordsLinked to original sources

Deletion of major shell protein of ethanolamine utilization microcompartment reduces intrinsic antibiotic resistance, biofilm and intracellular survival of Salmonella Typhimurium

With the high rise in Salmonella infection and emergence of antibiotic-resistant variants, developing a novel strategy to control the pathogen is imperative. Earlier studies revealed that Salmonella deploys ethanolamine (EA) metabolic machinery to disseminate in the intestine. Salmonella with a defect in EA metabolism manifests with lower intestinal colonization efficiency. Remarkably, the potential of EA metabolism as a therapeutic target is yet to explore. Our study revealed that supplementation of EA and vitamin B12 in both rich and minimal media enhanced biofilm formation, increased motility, and increased tolerance of Salmonella to some antibiotics. Conversely, mutants deficient in EA metabolic enzymes exhibited no physiological fitness. In Salmonella, EA metabolic enzymes are localized within a proteinaceous microcompartment (MCP) shell composed of thousands of copies of shell proteins encoded by five genes from the eut operon. Fascinatingly, bacterial cells with defective MCP shell due to mutation in the major shell proteins showed enhanced susceptibility towards a number of antibiotics in minimal media. The mutants were unable to form biofilm, produced lower curli expression and were defective in flagellar motility. Also, mutation in one of the major shell proteins reduced intramacrophagic viability of Salmonella. Notably, phenotypes were restored upon ectopic expression of corresponding genes. It was evident that mutation in the MCP shell proteins downregulated the expression of genes related to pathogenicity. Overall, this study sheds new light on understanding the relationship between EA metabolism and bacterial physiology that would pave the way for developing novel therapeutic interventions against Salmonella.

microbiology↗

Fungal communities (Mycobiome) as potential ecological indicators within confluence stretch of Ganges and Yamuna Rivers, India

River confluences are a hub of biodiversity with limited information with respect to the structure and the functions of the microbial communities. The River Ganges is the national river of India, having manifold significance such as social, mythological, historic, geographic and agro-economic. It forms a sacred confluence (known as Triveni Sangam) with River Yamuna at Prayagraj, India. Recent reports indicated the presence of fecal coliform bacteria, an indicator recognized for water contamination in Ganges River leading to pollution. However, Fungi are also gaining attention as potential biological indicators of the trophic status of some rivers globally, but remain under-explored in terms of diversity, ecology and functional aspects. We performed whole long read, metagenome sequencing (MinION) of the sediment samples collected in December 2017 from confluence zone of Ganges and Yamuna Rivers spanning the pre-confluence, confluence and post-confluence zones. Mycobiome reads revealed a plethora of fungal communities, extending from saprophytes, endoparasites and edible fungi, to human pathogens, plant pathogens and toxin producers. The fungal genera recognized as bio-indicators of river pollution (Aspergillus, Penicillium) and eutrophication (Kluveromyces, Lodderomyces, and Nakaseomyces), were present in all samples. Functional gene analyses of myco-communities uncovered hits for neurodegenerative diseases and xenobiotic degradation potential, supporting bio-indicators of pollution. This study forms a foundational basis for understanding the impact of various anthropogenic activities on the mycobiome, as a bio-indicator of pollution across the confluence of Ganges and Yamuna Rivers and post-confluence of River Ganges, and could be useful in mitigating strategies for cleaning strategies of the Ganges River.

ecology↗