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Cooke, C.

Publications and source records attributed to Cooke, C..

2 recordsLinked to original sources

Fish remain high in selenium long after mountaintop coal mines close

Mountaintop removal (MTR) coal mining generates large volumes of waste rock. Weathering of this waste rock releases selenium, which can bioaccumulate to levels that can harm, and even extirpate, downstream fish communities. This is well demonstrated in ecosystems impacted by active MTR operations; however, less is known about the long-term impacts after coal mines close. Here we show that MTR coal mines still present an acute threat to downstream fish populations, decades after mining ends. Crowsnest Lake (Alberta, Canada) receives runoff from the Tent Mountain Coal Mine, which closed in the 1980s and part of which was certified reclaimed. Fish in Crowsnest Lake contain tissue selenium concentrations (5-26 {micro}g/g dry weight) that exceed guidelines and rival fish selenium levels downstream of active MTR operations. This is despite lake water selenium concentrations ([≤]2 {micro}g/L) that are below water quality guidelines intended to protect fish. The clinical signs of selenium poisoning in fish are similar to the symptoms of Whirling Disease, which was first detected in the Crowsnest basin in 2016 making this the first aquatic system to be impacted by both stressors. This finding demonstrates that the biological impacts of MTR coal mining can persist long after mining operations end, and it suggests that any further coal mine development may well push the Crowsnest fishery beyond sustainability. SynopsisFish in Crowsnest Lake, Alberta, are high in selenium sourced from an abandoned mountaintop removal coal mine.

ecology↗

Gigapixel behavioral and neural activity imaging with a novel multi-camera array microscope

The dynamics of living organisms are organized across many spatial scales. However, current cost-effective imaging systems can measure only a subset of these scales at once. We have created a scalable multi-camera array microscope (MCAM) that enables comprehensive high-resolution recording from multiple spatial scales simultaneously, ranging from cellular structures to large-group behavioral dynamics. By collecting data from up to 96 cameras, we computationally generate gigapixel-scale images and movies with a field of view over hundreds of square centimeters at 5um sensitivity. This allows us to observe the behavior and fine anatomical features of numerous freely moving model organisms on multiple spatial scales, including larval zebrafish, fruit flies, nematodes, carpenter ants, and slime mold. The MCAM architecture allows stereoscopic tracking of the z-position of organisms using the overlapping field of view from adjacent cameras. Further, we demonstrate the ability to acquire dual color fluorescence video of multiple freely moving zebrafish, recording neural activity via ratiometric calcium imaging. Overall, the MCAM provides a powerful platform for investigating cellular and behavioral processes across a wide range of spatial scales by removing the bottlenecks imposed by single-camera image acquisition systems.

bioengineering↗