bioRxiv Science⌕ Search

Biology subjects

Contreras, F.

Publications and source records attributed to Contreras, F..

2 recordsLinked to original sources

Syndecan-1 Promotes Alveolar Type 2 Epithelial Cell Senescence during Lung Fibrosis.

Idiopathic pulmonary fibrosis (IPF) is an age-related, progressive, and fatal interstitial lung disease for which effective therapies remain limited. Alveolar type 2 (AT2) epithelial cells serve as facultative stem cells essential for alveolar repair; however, AT2 cell senescence disrupts epithelial regeneration and contributes to fibrotic remodeling in IPF. Syndecan-1 is a transmembrane heparan sulfate proteoglycan predominantly expressed by lung epithelial cells, but its role in AT2 dysfunction during fibrosis is poorly defined. Here, we demonstrate that syndecan-1 is robustly upregulated in AT2 cells in IPF and other fibrotic lung diseases, as well as in murine bleomycin-induced lung fibrosis. Syndecan-1 expression was further enhanced with aging and associated with increased fibrotic burden in aged mice. Using integrated human transcriptomic analyses, mouse genetic models, and epithelial cell-based systems, we show that excess syndecan-1 promotes cell-autonomous epithelial senescence and impairs AT2 progenitor function. Elevated syndecan-1 reduced AT2 renewal capacity, disrupted differentiation, and diminished surfactant protein C level, whereas genetic loss of syndecan-1 attenuated senescence and preserved epithelial function following injury. Together, these findings identify syndecan-1 as a critical epithelial regulator of AT2 senescence and maladaptive repair in pulmonary fibrosis and support targeting syndecan-1-driven epithelial dysfunction as a potential therapeutic strategy.

cell biology↗

KnowVolution of an efficient polyamidase through molecular dynamics simulations of incrementally docked oligomeric substrates

Management of synthetic polymer waste is one of the most pressing challenges for society today. Enzymatic recycling of polycondensates like polyamides (PA), however, remains limited due to a lack of efficient polyamidases. This study reports the directed evolution of the polyamidase NylCp2-TS. Key positions involved in enzyme-substrate interactions and PA 6 hydrolysis are identified through random mutagenesis and molecular dynamics (MD) simulations. The final variant, NylC-HP (NylCp2-TSF134W/D304M/R330A), exhibits a 6.9-fold increased specific activity (520 {+/-} 19 {micro}mol6-AHAeq. h-1 mgenzyme-1) and enhanced thermal stability (Tm = 90 {degrees}C, {Delta}Tm = 4.2 {degrees}C), making NylC-HP the fastest polyamidase for PA 6 and PA 6,6 hydrolysis. Despite the improved reaction rate, the degree of depolymerization remains below 1 %. To understand the molecular basis of achieved improvements and factors limiting the degree of depolymerization, intra- and intermolecular interactions of various enzyme-substrate complexes are analyzed by incremental docking of PA 6 tetramers and MD simulations. After optimizing the activity and stability of NylC-HP, the findings suggest that widening the substrate binding pocket is likely necessary to improve substrate accessibility to target more buried attack sites on the polymer surface, and thereby enhancing the degree of depolymerization.

bioengineering↗