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Biology subjects

Collins, D. A.

Publications and source records attributed to Collins, D. A..

3 recordsLinked to original sources

Risk Factors and Patterns of Treponema Infection Affecting Olive Baboons in Gombe National Park

Treponema pallidum subsp. pertenue (TPE) causes yaws, a chronic, nonvenereal treponematosis characterized by contagious cutaneous lesions in early stages and destructive bone involvement in the tertiary stage. In the latency stage, the infection is asymptomatic with only serologic markers. A retrospective analysis of health, demographic, and behavioral records using a Generalized Linear Mixed Model (GLMM) with binomial distribution, conducted through R software to assess disease risks and trends from January 2019 to December 2024 of wild baboons at Gombe, revealed an overall clinical prevalence of 11.24% (2018/17946) across the eight studied troops. Age was a strong predictor where infants (OR = 0.05, p < 0.001), juveniles (OR = 0.27, p < 0.001), and subadults (OR = 0.65, p < 0.01) had significantly reduced odds of displaying Treponema signs compared to adults. Troops B.C and D.D exhibited elevated infection risk (OR = 2.74 and 2.63, respectively). Pregnant females (OR = 0.19, p < 0.001), wounded baboons (OR = 0.45, p < 0.001), and male immigrants (OR = 0.47, p < 0.001) were less likely to show signs. Infection signs were also lower during wet seasons (OR = 0.81, p < 0.001). Notably, the odds of infection increased consistently over time (Year OR = 1.73, p < 0.001). Understanding the ecological and demographic determinants of Treponema transmission is essential for disease surveillance, conservation, and One Health initiatives. This study presents the first long-term dataset on (TPE) infection in wild baboons from Tanzania and East Africa. Author SummaryTreponema pallidum subspecies pertenue (TPE) bacteria can cause debilitating disease in both humans and animals, yet little is known about how it spreads among wild Non-Human Primates. We studied a large population of habituated baboons and analyzed how various factors like Age, Troop, Pregnancy, Wounds, male immigration, Treatments and Interactions affect the likelihood of catching and showing signs of Treponema infection. Our analysis found that younger baboons are much less likely to show symptoms, but infection risk increases with Age. Some troops had significantly higher infection rates compared to others. Pregnant females and immigrants (Males) were less likely to show symptoms, possibly due to behavioral or biological differences. The risk of infection has also been increasing year after year. These findings suggest Treponema is becoming more common and highlight the importance of targeted monitoring and control in high-risk groups. Understanding these dynamics helps us protect wild primates and prevent cross-species transmission and potentially spill over to humans.

pathology↗

Lysogenized phages of methanotrophic bacteria show a broad and untapped genetic diversity

Methanotrophs are a unique class of bacteria with the ability to metabolize single-carbon compounds such as methane. They play an important role in the global methane cycle and have great potential as industrial platforms for the bioconversion of methane from industrial waste streams into valuable products, such as biofuels and bioplastics. However, many aspects of methanotroph biology have yet to be elucidated, including the prevalence and impact of lysogenized bacteriophages (phages), which can greatly affect both the ecology and the industrial performance of these bacteria. The present study investigates the presence of putative prophages in three gammaproteobacterial (Methylobacter marinus A45, Methylomicrobium album BG8, Methylomonas denitrificans FJG1) and two alphaproteobacterial (Methylosinus trichosporium OB3b, Methylocystis sp. Rockwell) methanotrophs using four programs predicting putative phage sequences (PhageBoost, PHASTER, Phigaro, and Island Viewer). Mitomycin C was used to trigger induction of prophages, which was monitored through infection dynamics. Successfully induced phages from M. marinus A45 (MirA1, MirA2), M. album BG8 (MirB1), and M. trichosporium OB3b (MirO1) were isolated and characterized using transmission electron microscopy. Subsequently, bioinformatic analyses (BLAST and phylogenetics) were performed on three induced phages to obtain a profile of their respective genetic makeup. Their broad diversity and differences from previously known phages, based on whole genome and structural gene sequences, suggest they each represent a new phage family, genus and species: "Britesideviridae Inducovirus miraone", "Patronusviridae Enigmavirus miratwo", and "Kainiviridae Tripudiumvirus miroone" represented by isolates MirA1, MirA2, and MirO1, respectively.

microbiology↗

Repurposing a macromolecular machine: Architecture and evolution of the F7 chemosensory system

How complex, multi-component macromolecular machines evolved remains poorly understood. Here we reveal the evolutionary origins of the chemosensory machinery that controls flagellar motility in Escherichia coli. We first identified ancestral forms still present in Vibrio cholerae, Pseudomonas aeruginosa, Shewanella oneidensis and Methylomicrobium alcaliphilum, characterizing their structures by electron cryotomography and finding evidence that they function in a stress response pathway. Using bioinformatics, we then traced the evolution of the system through {gamma}-Proteobacteria, pinpointing key evolutionary events that led to the machine now seen in E. coli. Our results suggest that two ancient chemosensory systems with different inputs and outputs (F6 and F7) existed contemporaneously, with one (F7) ultimately taking over the inputs and outputs of the other (F6), which was subsequently lost.

microbiology↗