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Coleto-Alcudia, V.

Publications and source records attributed to Coleto-Alcudia, V..

2 recordsLinked to original sources

Crosstalk between Ovate Family Proteins, plant hormones, and microtubule dynamics regulating fruit shape

Fruit shape is a key horticultural trait shaped by conserved genetic pathways and hormonal interactions, yet the mechanisms underlying shape diversity in fleshy fruits remain incompletely understood. Studies in model species such as Arabidopsis thaliana, tomato, and rice have established Ovate Family Proteins (OFPs) as central regulators of organ morphology through their interactions with brassinosteroid (BR) and gibberellin (GA) pathways and cytoskeleton dynamics. Here, we combine phylogenetic, transcriptomic, and co-expression network analysis to investigate fruit shape regulation in peach and apple, two major Rosaceae crops. We show that flat and oblong phenotypes are associated with distinct OFP expression patterns and with coordinated changes in hormone-related modules, revealing conserved OFP-hormone-cytoskeleton regulatory circuits. Flat shapes were linked to the activation of flat-associated OFPs in the absence of brassinosteroid signalling, whereas oblong shapes were associated with the activation of elongation-related OFPs under brassinosteroid-responsive conditions. Our findings extend current models of fruit morphology by providing species-specific mechanistic insight into OFP-mediated regulation in Rosaceae, offering a refined framework for breeding fruit shape.

genomics↗

TOTEM: A web TOol for Tissue-EnrichMent analysis on gene lists

Analysis of spatiotemporal patterns of gene expression is crucial to decode biological systems responses. High-throughput sequencing allows in-depth transcriptome analyses and experimental designs, providing valuable reference expression atlases. Specifically, testing overrepresentations of tissue-specific genes based on these atlases can provide valuable insights; however, such an approach is not accessible to inexperienced users. Here, we introduce TOTEM (TOol for Tissue-EnrichMent), a web tool designed to calculate enrichment values per tissue by identifying tissue-specific genes from an organ/organism of interest given a user gene list. Results are visually represented, and users gene classified. The utility of TOTEM is manifest when using integrated single cell expression atlases, enabling the study of complicated tissues, with the maximum possible resolution. Its effectiveness is validated by the study of BRL3 role in stress specifically from the vascular tissues. Finally, TOTEMs modular design allows for continual integration of new experiments. TOTEM can be freely accessed at: https://totemwebtool.com.

plant biology↗