bioRxiv Science⌕ Search

Biology subjects

Claverie, T.

Publications and source records attributed to Claverie, T..

2 recordsLinked to original sources

FishWIO: a labeled image dataset of Western Indian Ocean reef fishes for training and testing classification algorithms

Monitoring fish communities is essential for understanding biodiversity dynamics and coral reef ecosystem health. Underwater imaging provides a non-invasive and repeatable approach for such monitoring, yet analysis of large volumes of video data remains extremely time-consuming for experts. Resolving such a bottleneck is today within reach, yet towards automated fish identification, large and high-quality, labelled image datasets are critical for training and testing reliable deep learning models. However, to date, no such dataset exists for the Western Indian Ocean (WIO), a global biodiversity hotspot hosting more than 300 common non-cryptobenthic fish species and facing increasing anthropogenic pressures. This paper presents a novel and publicly available dataset of 114,664 images annotated from 186 videos recorded using fixed underwater cameras on shallow reef habitats from Mayotte archipelago. All images were labelled and validated by trained marine biologists following a standardized protocol. Each image includes detailed metadata describing recording conditions. The dataset comprises 124 reef fish species (including 110 with >200 images) and 8 background classes. This dataset will allow training and testing automated fish classification models.

ecology↗

Species ecology explains the various spatial components of genetic diversity in tropical reef fishes

Intraspecific genetic diversity should be dependent on species ecology, but the influence of ecological traits on interspecific differences in genetic variation is yet to be explored. Generating sequenced data for 20 tropical reef fish species of the Western Indian Ocean, we investigate how species ecology influences genetic diversity patterns from local to regional scales. We distinguish between the , {beta} and{gamma} components of genetic diversity, which we subsequently link to six ecological traits. In contrast to what is expected by the neutral theory of molecular evolution, we find that the and{gamma} components of genetic diversity are negatively associated with species abundance, which can be explained by larger variance in reproductive success in large populations and/or higher introgression in less frequent species. Pelagic larval duration, an important dispersal trait in marine fishes, is found to be negatively related to genetic {beta} diversity, as expected by theory. We conclude that the neutral theory of molecular evolution may not be sufficient to explain genetic diversity in tropical reef fishes and that additional processes influence those relationships.

genetics↗