Biology subjects

Clarke, D. A.

Publications and source records attributed to Clarke, D. A..

5 recordsLinked to original sources

bioRxiv2025

Resilient Antarctic soil bacteria consume trace gases across wide temperature ranges

Polar desert soils host diverse microbial communities despite limited nutrients and frequent temperature and light fluctuations. Adapting to these extremes, most bacteria possess high-affinity hydrogenases and carbon monoxide dehydrogenases, enabling them to use atmospheric trace gases such as hydrogen (H2) and carbon monoxide (CO) to generate energy and fix carbon. Despite the foundational importance of this process in polar desert ecosystems, little is known about the thermal sensitivity of trace gas oxidation or how this process will respond to climate warming. Here, we show through in situ and ex situ incubations that H2 consumption is an exceptionally thermally resilient process that can occur from -20 to +75{degrees}C, at rates comparable to temperate ecosystems (peaking at 8.56 nmol H2 h-1 g dry soil-1 at 25{degrees}C). Temperature ranges of CO (-20 to 42{degrees}C) and CH4 (-20 to 30{degrees}C) oxidation are also wider than expected, though the pattern of thermal sensitivity conforms with general theory. Metagenomic analyses support these data, revealing that atmospheric H2 and CO oxidisers are widespread, diverse, and abundant, and suggesting most Antarctic bacteria function below their temperature optima for these processes. Modelling of seasonal temperatures across ice-free Antarctica under current and future emissions scenarios indicates that H2 and CO oxidation can occur year-round, increasing by up to 35% or 44%, respectively, by 2100. Our results indicate constitutive aerotrophic activity contributing to Antarctic ecosystem functioning and biodiversity across spatial and temporal scales, with further studies required to understand how it interacts with photosynthesis in a changing climate.

microbiology↗

bioRxiv2024

Antarctic biosecurity policy effectively manages the rates of alien introductions

Reducing the rates and impacts of biological invasions is a major policy goal of international biodiversity agreements. Yet the extent to which this goal is being achieved and the agreements hence successful in this respect remains unclear. Here we use a comprehensive record of alien species introduction in the terrestrial Antarctic, including its surrounding Southern Ocean Islands, spanning 115 years (1900-2015), to quantify the impact of biosecurity policy on alien species introduction rates in the region, where invasive alien species are a primary environmental conservation threat and management priority. We show that although many parts of the Antarctic have been colonised by non-indigenous taxa, recent rates of introduction appear to be slowing or static in most parts, compared with increases in the past. Our results vindicate the regional Antarctic focus on biosecurity measures, but also demonstrate the need for stricter enforcement due to rapid socio-environmental changes. Three key pointsO_LIBiological invasions present a large and growing threat to Antarctic ecosystems under climate change and expanding human activity C_LIO_LIOver the 20th century, there was no trend in alien species introduction rate in five Antarctic regions and a significantly increasing trend in the remaining five regions C_LIO_LIDespite this variation, in most regions, the number of introductions remains low, indicating that Antarctic biosecurity has been effective at slowing the rate of introduction C_LI

ecology↗

bioRxiv2022

Invasive alien insects represent a clear but variable threat to biodiversity

Invasive alien insects as a driver of biodiversity change are an important yet understudied component of the general threat of biological invasions. The environmental impacts of invasive alien insects are varied and widespread, with evidence to suggest that an insect species global maximum impact is likely to increase in severity as it increases its non-native distribution. Two potential explanations are that large geographic distributions include environmental heterogeneity and increase resource availability, or that there are intrinsic factors of widely-spread species that also facilitate greater impacts. Determining which explanation is more likely, and developing a more comprehensive and general understanding of the environmental impacts of invasive alien species, can be assisted by addressing the information shortfalls highlighted in this research.

ecology↗

bioRxiv2021

Policy-relevant indicators for invasive alien species assessment and reporting

Invasive alien species are repeatedly shown to be amongst the top threats to biodiversity globally. Robust indicators for measuring the status and trends of biological invasions are lacking, but essential for monitoring biological invasions and the effectiveness of interventions. Here, we formulate and demonstrate three such indicators that capture the key dimensions of species invasions, each a significant and necessary advance to inform invasive alien species policy targets: 1) Rate of Invasive Alien Species Spread, which provides modelled rates of ongoing introductions of species based on invasion discovery and reporting. 2) Impact Risk, that estimates invasive alien species impacts on the environment in space and time and provides a basis for nationally targeted prioritization of where best to invest in management efforts. 3) Status Information on invasive alien species, that tracks improvement in the essential dimensions of information needed to guide relevant policy and data collection and in support of assessing invasive alien species spread and impact. We show how proximal, model-informed status and trend indicators on invasive alien species can provide more effective global (and national) reporting on biological invasions, and how countries can contribute to supporting these indicators.

ecology↗

bioRxiv2020

Reducing uncertainty in impact assessments for alien species

Impact assessment is a widely used and cost-effective tool for prioritising invasive alien species. With the number of alien and invasive alien species expected to increase, reliance on impact assessment tools for the identification of species that pose the greatest threats will continue to grow. Given the importance of such assessments for management and resource allocation, it is critical to understand the uncertainty involved and what effect this may have on the outcome. Using an uncertainty typology and insects as a model taxon, we identified and classified the sources and types of uncertainty when performing impact assessments on alien species. We assessed 100 alien insect species across two rounds of assessments with each species independently assessed by two assessors. Agreement between assessors was relatively low for all three EICAT components (mechanism, severity, confidence) after the first round. For the second round, we revised guidelines and gave assessors access to each others assessments which improved agreement by between 20-30%. Of the 12 potential reasons for assessment discrepancies identified a priori, 11 occurred. The most frequent sources (and types) of uncertainty (i.e. differences between assessment outcomes for the same species) were: incomplete information searches (systematic error), unclear mechanism and/or extent of impact (subjective judgment due to a lack of knowledge), and limitations of the assessment framework (context dependence). In response to these findings, we identify actions to reduce uncertainty in the impact assessment process, particularly for assessing speciose taxa with diverse life histories such as Insecta. Evidence of environmental impact was available for most insect species, and (of the non-random original subset of species assessed) 14 or 29% of those with evidence were identified as high impact species (with either Major or Massive impact). Although uncertainty in risk assessment, including impact assessments, can never be eliminated, identifying and communicating its source and variety is a first step toward its reduction and a more reliable assessment outcome, regardless of the taxa being assessed.

ecology↗