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Clark, V.

Publications and source records attributed to Clark, V..

2 recordsLinked to original sources

Colonies of Acropora formosa with greater survival show conserved calcification rates

Coral reefs are facing increasingly devasting impacts from ocean warming and acidification due to anthropogenic climate change. In addition to reducing greenhouse gas emissions, potential solutions have focused either on reducing light stress during heating, or the potential for identifying or engineering "super corals". These studies, however, have tended to focus primarily on the bleaching response of corals, and assume that corals that bleach earlier in a thermal event are more likely to die. Here, we explore how survival, potential bleaching, and coral skeletal growth (as branch extension and densification) varies for conspecifics collected from distinctive reef zones at Heron Island on the Southern Great Barrier Reef. A series of reciprocal transplantation experiments were undertaken using the dominant reef building coral (Acropora formosa) between the highly variable reef flat and the less variable reef slope environments. Coral colonies originating from the reef flat had higher rates of survival and thicker tissues but reduced rates of calcification than conspecifics originating from the reef slope. The energetics of both populations however benefited from greater light intensity offered in the shallows. Reef flat origin corals moved to the lower light intensity of reef slope reduced protein density and calcification rates. For A. formosa, genetic difference, or long-term entrainment to a highly variable environment, appeared to promote coral survival at the expense of calcification. The response divorces coral resilience from carbonate coral reef resilience, a response that was further exacerbated by reductions in irradiance. As we begin to discuss interventions necessitated by the CO2 that has already been released to the atmosphere, we need to prioritise our focus on the properties that maintain valuable carbonate ecosystems. Rapid and dense calcification by corals such as branching Acropora is essential to the ability of carbonate coral reefs to rebound following disturbances events, but may be the first property that is sacrificed to enable coral genet survival under stress.

ecology

Genetic characterisation of a large antibiotic resistant environmental ST131 E. coli plasmid using a long read hybrid assembly approach

Escherichia coli Strain Type 131 are a globally disseminated environmental E. coli that has been linked to the capture and spread of plasmid mediated blaCTX-M type extended spectrum beta-lactamase (ESBLs). Accurately identifying such resistance genes in their wider genetic context provides a greater understanding of the mechanisms of selection and persistence in the environment. In this study we use a novel DNA extraction and enrichment method in combination with a custom long-read scaffold hybrid-assembly and polishing pipe line to identify the genetic context of the plasmid borne blaCTX-M gene previously identified in an ST131 environmental E. coli isolate. This has allowed us to discern the complete structure of a ~100kb environmental plasmid and further resolve the blaCTX-M variant to the group 9 blaCTX-M-27 gene. The upstream IS26 insertion element associated with the global capture and dissemination of blaCTX-M-15 was also identified in proximity to blaCTX-M-27. Furthermore, the lack of conjugative machinery identified on this plasmid, in combination with a toxin-antitoxin and plasmid partitioning system, indicates a mechanism of vertical transmission to maintain persistence in a population.

molecular biology