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Chio, C. M.

Publications and source records attributed to Chio, C. M..

2 recordsLinked to original sources

Hsp90-dependent triage of the glucocorticoid receptor via the CHIP E3 ubiquitin ligase

The molecular chaperone Hsp90 is required to ensure the proper folding and activation of approximately 10% of the proteome throughout their cellular lifetime1,2. Given that Hsp90 recognizes and preferentially interacts with partially unfolded client states, it is well-poised to promote the degradation of misfolded clients and clients past the point of re-foldability3,4,5. Long- standing phenomenological data suggest that Hsp90 could directly present a client protein to an E3 ubiquitin ligase, in this way mediating degradative ubiquitylation of the client. However, this has yet to be directly demonstrated for any client. To assess this mechanism for the model Hsp90 client the glucocorticoid receptor (GR), a ligand-dependent transcription factor, we reconstituted in vitro the Hsp90-dependent folding cycle for GR6, in the presence of the E3 ligase CHIP. Remarkably, we discovered that CHIP binds to and efficiently ubiquitylates GR as presented by a previously characterized Hsp90-dependent pro-folding state called the GR-maturation state (Hsp90-p23-GR), in which GR has been visualized via cryo-EM to be folded in the native state and ligand-bound7. We determined a low-resolution ([~]14 [A]) cryo-EM reconstruction of the four- component Hsp90-p23-GR-CHIP complex, and furthermore resolved from the same dataset a 3.53 [A] reconstruction of a Hsp90-p23-GR complex in which, surprisingly, GR is partially disordered and ligand-free--in contrast with what we previously observed7, presumably as a consequence of interaction with CHIP. Our results suggest a mechanism by which Hsp90 can simultaneously partition a client between both folding and degradation outcomes and in this way directly mediate protein-triage decisions through its interactions with E3 ligases.

biochemistry↗

Extending Chemical Perturbations Of The Ubiquitin Fitness Landscape In A Classroom Setting

Although the primary protein sequence of ubiquitin (Ub) is extremely stable over evolutionary time, it is highly tolerant to mutation during selection experiments performed in the laboratory. We have proposed that this discrepancy results from the difference between fitness under laboratory culture conditions and the selective pressures in changing environments over evolutionary time scales. Building on our previous work (Mavor et al 2016), we used deep mutational scanning to determine how twelve new chemicals (3-Amino-1,2,4-triazole, 5-fluorocytosine, Amphotericin B, CaCl2, Cerulenin, Cobalt Acetate, Menadione, Nickel Chloride, p-fluorophenylalanine, Rapamycin, Tamoxifen, and Tunicamycin) reveal novel mutational sensitivities of ubiquitin residues. We found sensitization of Lys63 in eight new conditions. In total, our experiments have uncovered a sensitizing condition for every position in Ub except Ser57 and Gln62. By determining the Ubiquitin fitness landscape under different chemical constraints, our work helps to resolve the inconsistencies between deep mutational scanning experiments and sequence conservation over evolutionary timescales.\n\nBuilds onMavor D, Barlow KA, Thompson S, Barad BA, Bonny AR, Cario CL, Gaskins G, Liu Z, Deming L, Axen SD, Caceres E, Chen W, Cuesta A, Gate R, Green EM, Hulce KR, Ji W, Kenner LR, Mensa B, Morinishi LS, Moss SM, Mravic M, Muir RK, Niekamp S, Nnadi CI, Palovcak E, Poss EM, Ross TD, Salcedo E, See S, Subramaniam M, Wong AW, Li J, Thorn KS, Conchuir SO, Roscoe BP, Chow ED, DeRisi JL, Kortemme T, Bolon DN, Fraser JS. Determination of Ubiquitin Fitness Landscapes Under Different Chemical Stresses in a Classroom Setting. eLife. 2016.\n\nImpact StatementWe organized a project-based course that used deep mutational scanning in multiple chemical conditions to resolve the inconsistencies between tolerance to mutations in laboratory conditions and sequence conservation over evolutionary timescales.

bioinformatics↗