bioRxiv Science⌕ Search

Biology subjects

Che, B.

Publications and source records attributed to Che, B..

4 recordsLinked to original sources

Bioimage postprocessing based on discrete wavelet transform and Lucy-Richardson deconvolution methods

Accompanied with the increasing requirements of probing micro/nanoscopic structures of biological samples, a variety of image processing algorithms have been developed for visualization or to facilitate data analysis. However, it remains challenging to enhance both the signal-to-noise ratio and image resolution using a single algorithm. In this investigation, we propose an approach utilizing discrete wavelet transform (DWT) in combination with Lucy-Richardson (LR) deconvolution (DWDC). Our results demonstrate that the signal-to-noise ratio and resolution of live cells microtubule network are considerably improved, allowing recognition of features as small as 120 nm. Notably, the approach is independent of imaging system and shows robustness in processing fibrous structures, e.g. the cytoskeleton networks.

biophysics↗

Proinflammatory S100A9 Regulate Differentiation and Aggregation of Neural Stem Cells

Inflammation is the primary pathological feature of neurodegenerative diseases such as Alzheimers (AD) and Parkinsons disease. Proinflammatory molecules (e.g. S100A9) play important roles during progression of the diseases by regulating behavior and fate of multiple cell types in the nervous system (1). Our earlier studies reveal that S100A9 is toxic to neurons, and its interaction with A{beta} peptides leads to the formation of large non-toxic amyloidogenic aggregates, suggesting a protective role of A{beta} amyloids (2). We herein, demonstrate that S100A9 interacts with neural stem cells (NSCs) and causes NSC differentiation. In the brain of transgenic AD mouse models, we found large quantities of proinflammatory S100A9, which colocalizes with the differentiated NSCs. NSC sphere formation, which is a representative character of NSC stemness, is also substantially inhibited by S100A9. These results suggest that S100A9 is a representative marker for the inflammatory conditions in AD, and it promotes NSC differentiation. Intriguingly, in contrast to the death of both stem and differentiated NSCs caused by high S100A9 doses, S100A9 at a moderate concentration is toxic only to the early differentiated NSCs (i.e. progenitor cells and immature neurons), but not the stem cells. We therefore postulate that at the early stage of AD, expression of S100A9 leads to NSC differentiation, which remedies the neuron damages. The application drugs, which help maintain NSC stemness (e.g. PDGF), may help overcome the acute inflammatory conditions and improve the efficacy of NSC transplantation therapy.

cell biology↗

Dynamic Mechanical Cue Facilitate Collective Responses of Crowded Cell Population

Collective cell behavior is essential for tissue growth, development and function, e.g. heartbeat1, immune responses2 and cerebral consciousness3. In recent years, studies on population cells uncover that collective behavior emerges in both inter- and intra-cellular activities, e.g. synchronized signal cascade4, and collective migration5. As the movement and shape transition of cells within the crowded environment of biological tissue can generate mechanical cues at the cell-cell interface, which may affect the signaling cascade6,7, we suspect that the inter- and intra-cellular collective behavior interplay with one another and cooperatively regulate life machinery. To verify our hypothesis, we study the collective responses of fibroblasts in a confluent cell monolayer (CCM). Our results demonstrate that cells in CCM show distinctive behavior as compared to the stand-alone (SA) cells, suggesting effect of inter-cellular interactions. Upon periodic TNF- stimulation, collective behavior emerges simultaneously in NF-{kappa}B signaling cascade and nuclear shape fluctuations in CCM but not SA cells. We then model the inter-cellular interactions in CCM using a customized microfluidic device, and discover a feedback loop intrinsic to CCM, in which dynamic mechanical cues and mechano-signaling act as link connecting the inter- and intra-cellular collective activities. We found that mechano-signaling triggered by the dynamic mechanical cues causes collective nuclear shape fluctuation (NSF), which subsequently facilitates the collective behavior in NF-{kappa}B dynamics. Furthermore, our studies reveal that regardless of the input TNF- periodicity, cellular responses of single fibroblasts are elevated when the dynamic mechanical cues synergize with the chemical inputs, and inhibited when there is phase-mismatching. We, therefore, postulate that besides the biological significance of mechano-signaling in regulating collective cell responses, the induction of dynamic mechanical cues to human body may be a potential therapeutic approach, allowing us to regulate the action of single cells to achieve optimal tissue performance.

biophysics↗

Cell motion-coordinated fibrillar assembly of soluble collagen I to promote MDCK cell branching formation

Extracellular Matrix (ECM) assembly and remodeling are critical physiological events in vivo, and abnormal ECM assembly or remodeling is related to pathological conditions such as osteoarthritis, fibrosis, cancers, and genetic diseases. ECM assembly/remodeling driven by cells represents more physiological processes. Collagen I (COL) is very abundant in tissues, which assembly/remodeling is mediated by biochemical and mechanical factors. How cells regulate COL assembly biomechanically still remains to be well understood. Here we used fluorescent COL in the medium to study how cells assembled ECM which represents more physiological structures. The results showed that MDCK cells actively recruited COL from the medium and helped assemble the fibers, which in turn facilitated cell branching morphogenesis, both displaying high spatial associations and mutual dependency. Inhibition of cellular contraction force by ROCK and Myosin II inhibitors attenuated but did not block the COL fiber formation, while cell motion showed high consistency with the fiber assembly. Under ROCK or Myosin II inhibition, further analysis indicated high correlation between local cell movement and COL fiber strength as quantified from different regions of the same groups. Blocking cell motion by actin cytoskeleton disruption completely inhibited the fiber formation. These suggest that cell motion coordinated COL fiber assembly from the medium, possibly through generated strain on deposited COL to facilitate the fiber growth.

biophysics↗