bioRxiv ScienceSearch

Biology subjects

Chaudhuri, A.

Publications and source records attributed to Chaudhuri, A..

3 recordsLinked to original sources

Dynein catch bond as a mediator of codependent bidirectional cellular transport

Intracellular bidirectional transport of cargo on Microtubule filaments is achieved by the collective action of oppositely directed dynein and kinesin motors. Experiments have found that in certain cases, inhibiting the activity of one type of motor results in an overall decline in the motility of the cellular cargo in both directions. This counter-intuitive observation, referred to as paradox of codependence is inconsistent with the existing paradigm of a mechanistic tug-of-war between oppositely directed motors. Unlike kinesin, dynein motors exhibit catchbonding, wherein the unbinding rates of these motors decrease with increasing force on them. Incorporating this catchbonding behavior of dynein in a theoretical model, we show that the functional divergence of the two motors species manifests itself as an internal regulatory mechanism and provides a plausible resolution of the paradox of codependence.

biophysics

Distribution of Purines and Pyrimidines over miRNAs of Human, Gorilla and Chimpanzee

Meaningful words in English need vowels to break up the sounds that consonants make. The Nature has encoded her messages in RNA molecules using only four alphabets A, U, C and G in which the nine member double-ring bases (adenine (A) and Guanine (G)) are purines, while the six member single-ring bases (cytosine (C) and uracil (U)) are pyrimidines. Four bases A, U, C and G of RNA sequences are divided into three kinds of classifications according to their chemical properties. One of the three classifications, the purine-pyrimidine class is important. In understanding the distribution (organization) of purines and pyrimidines over some of the non-coding regions of RNA, all miRNAs from three species of Family Hominidae (namely human, gorilla and chimpanzee) are considered. The distribution of purines and pyrimidines over miRNA shows deviation from randomness. Based on the quantitative metrics (fractal dimension, Hurst exponent, Hamming distance, distance pattern of purine-pyrimidine, purine-pyrimidine frequency distribution and Shannon entropy) five different clusters have been made. It is identified that there exists only one miRNA in human hsa-miR-6124 which is purely made of purine bases only.\n\nAMS Subject Classification: 92B05 & 92B15

bioinformatics

Computational Complex Predator-Prey Dynamics

Two species predator-prey with stage structure of mature and immature mathematical models are studied over the last few decades. Xin-an Zhang et al studied a mathematical model with stage structure of two species in 2010. In this article, an attempt has been made to comprehend the coupled predator-prey dynamics with mature-immature stage structure and compare the dynamics with the existing model. The present model studied by Xin-an Zhang et al is purely realistic with assumptions of positive parameters. From the mathematical curiosity, we wonder to investigate the same with complex parameters and compared with the foreseen results. In addition, the present model is slightly modified to see some new dynamics of some additional fixed point including the previous fixed points.

ecology