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Chatrou, L. W.

Publications and source records attributed to Chatrou, L. W..

3 recordsLinked to original sources

Too hot for the weeds? Exploring the impact of climate change in herbaceous Convolvulaceae in Cerrado and Mata Atlantica biomes (SE Brazil)

AimWe investigated the potential resilience to climatic change of nine species of weeds in Convolvulaceae, using predictive spatial modeling across two contrasting biomes in Southeastern Brazil: Cerrado (=Savanna) and Mata Atlantica (=Atlantic Forest). We inferred future changes in distribution area, the climatic variables that will be most impactful, and the potential occurrence of future climatic refuges. LocationSoutheastern Brazil (Sao Paulo, Brazil). MethodsA total of 195, taxonomically vetted, distribution records were compiled for nine species of Convolvulaceae. Potential distribution areas were modelled in RStudio 1.3.1056 with R 3.6.3 using modleR; environmental layers used were the 19 bioclimatic variables with 30 seconds resolution. After a correlation analysis, four bioclimatic variables were selected for distribution modelling: Temperature Seasonality (BIO4), Mean Temperature of Wettest Quarter (BIO8), Precipitation of Wettest Month (BIO13) and Precipitation of Driest Quarter (BIO17). The species distribution modelling was performed using the Maxent algorithm for the present time (1960-1990) and for future projections (2050 and 2070), under two different scenarios of projections, moderate and pessimistic.. The final distribution models were generated through the selection of primary models with a minimum level of TSS (True Skills Statistics) equal to 0.7. ResultsThe analysed species demonstrated different levels of response to climatic change: Distimake aegyptius, D. dissectus, and Evolvulus pteurocaulon exhibited a gain in the climatic suitability range, regardless of the future scenarios. Other species, such as E. glomeratus, Ipomoea bonariensis, and I. alba showed a decline in climatic suitability range, more accentuated in the pessimistic scenario. Three species showed a positive response in a moderate future scenario, but a decline in the most extreme projection. Areas that may act, in the future, as climatic refuges for the displaced species are also highlighted, in view of being prioritised for conservation. Main ConclusionThis study reveals that climate change will have varied impacts on herbaceous species of Convolvulaceae occurring in the Brazilian Cerrado and Mata Atlantica biomes. Some species are likely to benefit from climate change, showing an increase in climatic suitability in both moderate and pessimistic future scenarios. Other species, however, are expected to experience a decline in suitable climatic conditions, in particular under the most pessimistic climatic scenario, and are more likely to be threatened in the future, due to the constriction of suitable habitats. The analysis also highlights that certain regions may serve as important climatic refuges for these species in the future. These findings emphasize the necessity for targeted conservation plans to protect the biodiversity of the Cerrado and Mata Atlantica phytogeographic domains and weed management strategies - not only in the present but also in future climatic conditions.

ecology↗

Towards a phylogenomic classification of Magnoliidae

PremiseMagnoliidae are a strongly supported clade of angiosperms. Previous phylogenetic studies based primarily on analyses of a limited number of mostly plastid markers have led to the current classification of magnoliids into four orders and 18 families. However, uncertainty remains regarding the placement of several families. MethodsHere we present the first comprehensive phylogenomic analysis of Magnoliidae as a whole, sampling 235 species from 199 (74%) genera and representing all families and most previously accepted subfamilies and tribes. We analyze newly generated data from the Angiosperms353 probe set using both coalescent and concatenation analyses and testing the impact of multiple filtering and alignment strategies. ResultsWhile our results generally provide further support for previously established phylogenetic relationships in both magnoliids as a whole and large families including Annonaceae and Lauraceae, they also provide new evidence for previously ambiguous relationships. In particular, we find support for the position of Hydnoraceae as sister to the remainder of Piperales and, for the first time, resolve the backbone of relationships among most genera of Myristicaceae. ConclusionsAlthough some of our results are limited by low gene recovery for a number of taxa and significant gene tree conflict for some relationships, this study represents a significant step towards reconstructing the evolutionary history of a major lineage of angiosperms. Based on these results, we present an updated phylogenetic classification for Magnoliidae, recognizing 21 families, summarizing previously established subfamilies and tribes, and describing new tribes for Myristicaceae.

evolutionary biology↗

Truly the best of both worlds: merging lineage-specific and universal baiting kits to maximize phylogenomic inference

PREMISEThe development of RNA baiting kits for reduced representation approaches of genomic sequencing is popularized, with universal and clade-specific kits for flowering plants available. Here, we provided an updated version of the Annonaceae bait kit targeting 799 low copy genes, known as Annonaceae799. METHODSThis new version of the kit combines the original 469 genes from the previous version of the Annonaceae kit with 334 genes from the universal Angiosperms353 kit. We also compared the results obtained using the Original Angiosperms353 kit with our custom approach. Parsimony informative sites (pis) were evaluated for all genes and combined matrices. RESULTSThe new version of the kit has extremely high rates of gene recovery. On average, 796 genes were recovered per sample, and 777.5 genes recovered with at least 50% of their size. Off-target reads were also obtained. Evaluating size, the proportion of on- and off-target regions, and the number of pis, the genes from the Angiosperms353 usually outperform the genes from the original Annonaceae bait kit. DISCUSSIONThe results obtained show that the new sequences from the Angiosperms353 aggregate variable and putative relevant bases for future studies on species-level phylogenomics, and within species studies. The merging of kits also creates a link between projects and makes available new genes for phylogenetic and populational studies.

evolutionary biology↗