bioRxiv Science⌕ Search

Biology subjects

Chan, P. L.

Publications and source records attributed to Chan, P. L..

2 recordsLinked to original sources

Protein kinase A gene knockout in Coprinopsis cinerea by CRISPR/Cas9 RNP complex system

Coprinopsis cinerea is a model mushroom for studying the developmental processes of homobasidiomycetous fungi. The development of C. cinerea depends on the sensing of environmental conditions, such as light, temperature, humidity and nutrients. The signal transduction pathway from the environmental condition sensors to the regulators and reproduction is an important research topic as the knowledge on it is still fragmentary. Protein kinases not only are crucial to the signal transduction, but also can be master switches of development. However, information on their role in basidiomycetous fungi is still limited. Using the effective gene-targeting of the current gene modification, a system of CRISPR/ Cas9 RNP with double strain template donor that contained a selective mark hygromycin cassette was developed in this study. In this system, CcPka1 gene knockout was successfully generated through homologues repair together with Cas9 RNP complexes. This was the first report to use CRISPR/ Cas9 RNP approach with C. cinerea. {Delta}CcPka1 mutants showed slow mycelial growth and rapid fruiting body induction compared to the wild type even when under high glucose condition. In addition, {Delta}CcPka1 mutants had significantly increased intracellular glucose level and decreased glycogen level. Moreover, {Delta}CcPka1 mutants regulated the gene expression of components in cAMP-PKA pathway. All these results demonstrated that PKA played an important role in the nutrient signal transduction and negatively regulated the fruiting body formation. This study also confirmed that GSK3 could be the downstream target of PKA, but their interaction requires further investigation.

genetics↗

The Phylotranscriptomic Hourglass Pattern in Fungi: An Updated Model

The "developmental hourglass" describes the morphological convergence to a conserved form at mid-stages of animal embryogenesis. The molecular hourglass pattern during embryogenesis was also identified across kingdoms. Previously, we reported young fruiting body as the conserved "waist" in mushroom-forming "developmental hourglass". However, its robustness is doubted because of the fungal diversity. Additionally, fungi lack embryogenesis, and develop directly from spore to hyphae with morphological similarities during the transition. Here, we updated the "developmental hourglass" model in the life cycle of fungi, namely, spore germination, vegetative growth, and sexual reproduction. Germinating spores, both sexual and asexual, showed the strongest transcriptomic conservation signals across the phyla Mucoromycota, Ascomycota and Basidiomycota. Cross kingdom comparisons revealed high expression levels of "information storage and processing" genes at the waist stages of embryonic and non-embryonic developments in animals, plants, and fungi. The "developmental hourglass" might reflect the mutual transcriptome switches on developmental transitions in eukaryotes that are additional to embryonic organogenesis. HighlightsO_LIUpdated fungal molecular "developmental hourglass" model in the life cycle of fungi C_LIO_LIGerminating spores are the evolutionarily conserved "waist" across fungal phyla C_LIO_LIHigh expression levels of "information storage and processing" genes at the waist stages in the embryonic and non-embryonic hourglasses across kingdoms C_LIO_LI"Developmental hourglass" may reflect the mutual transcriptome switches on developmental transitions in eukaryotes C_LI

evolutionary biology↗