Biology subjects

Cha, A.

Publications and source records attributed to Cha, A..

3 recordsLinked to original sources

bioRxiv2025

Neural plate pre-patterning enables specification of intermediate neural progenitors in the spinal cord

Spinal cord organization begins with the specification of a series of neural progenitor domains along the dorsal-ventral axis of the neural tube. Patterning at the dorsal and ventral ends is established by canonical morphogen gradients. Intermediate progenitor domains are located distally to morphogen sources yet display similar organization. How this is achieved is unclear and the relevant positional cues have not been identified. Here we show that intermediate progenitor domains are established through a distinct mechanism that operates in the preceding neural plate stage and leverages its multiple signaling inputs and morphogenesis. An integrated spatial atlas of transcription factor expression, signaling activity, and cell movement reveals that the neural plate comprises an array of cell states, defined by combinatorial signaling and morphogenesis-driven transitions between local signaling environments. Specifically, we find that p0 and p1 intermediate progenitors, located immediately outside the morphogen-patterned region, arise from specific precursor states that are established in the posterior neural plate by tailbud-derived Wnt signaling. Convergent-extension movements subsequently drive progenitor specification by displacing precursors out of Wnt/FGF signaling fields while shaping them into stripe-like domains. Thus, by controlling signaling exposure, tissue dynamics convert positional information encoded by signaling history into downstream fate specification. This mode of patterning may operate broadly across developmental contexts, with implications for tissue engineering and patterning-related disorders.

developmental biology↗

bioRxiv2018

Imaging breast cancer using a dual-ligand nanochain particle

Nanoparticles often only exploit the upregulation of a receptor on cancer cells to enhance intratumoral deposition of therapeutic and imaging agents. However, a single targeting moiety assumes that a tumor is homogenous and static. Tumoral microenvironments are both heterogenous and dynamic, often displaying variable spatial and temporal expression of targetable receptors throughout disease progression. Here, we evaluated the in vivo performance of an iron oxide nanoparticle in terms of targeting and imaging of orthotropic mouse models of aggressive breast tumors. The nanoparticle, a multi-component nanochain, was comprised of 3-5 iron oxide nanoparticles chemically linked in a linear chain. The nanoparticles surface was decorated with two types of ligands each targeting two different upregulated biomarkers on the tumor endothelium, P-selectin and fibronectin. The nanochain exhibited improved tumor deposition not only through vascular targeting but also through its elongated structure. A single-ligand nanochain exhibited a [~]2.5-fold higher intratumoral deposition than a spherical nanoparticle variant. Furthermore, the dual-ligand nanochain exhibited higher consistency in generating detectable MR signals compared to a single-ligand nanochain. Using a 7T MRI, the dual-ligand nanochains exhibited highly detectable MR signal within 3h after injection in two different animal models of breast cancer.

bioengineering↗

bioRxiv2018

Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity

Developmental enhancers integrate graded concentrations of input transcription factors (TFs) to create sharp gene expression boundaries. Here we examine the hunchback P2 (HbP2) enhancer which drives a sharp expression pattern in the Drosophila blastoderm embryo in response to the transcriptional activator Bicoid (Bcd). We systematically interrogate cis and transfactors that influence the shape and position of expression driven by HbP2, and find that the prevailing model, based on cooperative binding of Bcd to HbP2 is not adequate. We demonstrate that other proteins, such as pioneer factors, mediator and histone modifiers influence the shape and position of the HbP2 expression pattern. By comparing our results to theory, we assess how higher-order cooperativity and energy expenditure impact boundary location and sharpness. Our results emphasize that the bacterial view of transcription regulation, where pairwise interactions between regulatory proteins dominate, must be re-examined in animals, where multiple molecular mechanisms collaborate to shape the gene regulatory function.

genetics↗